Gene annotation
Transcriptome id Sobic.006G122500.1
Synonym Sb06g020290
Functional annotation methyltransferase domain containing protein, expressed
UniProt C5YAS9
Pfam PF08241
Panther DB PTHR10108 PTHR10108:SF788
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008168; methyltransferase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT3G01660 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os04g40530.1 : methyltransferase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010975
Brachypodium KQJ83179
Barley -
Wheat TraesCS2D02G338500 , TraesCS2B02G357700 , TraesCS2A02G324500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G122500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G049200 violaxanthin de-epoxidase, putative, expressed K09839: VDE, violaxanthin de-epoxidase
2 Sobic.001G252401 - -
3 Sobic.010G006300 homeobox domain containing protein, expressed -
4 Sobic.010G162500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -
5 Sobic.004G289300 expressed protein -
6 Sobic.004G342500 uncharacterized protein yqjG, putative, expressed K07393: ECM4, glutathionyl-hydroquinone reductase
7 Sobic.003G285600 peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
8 Sobic.003G403800 hydrolase, alpha/beta fold family domain containing protein, expressed -
9 Sobic.001G193800 - -
10 Sobic.001G536901 - -
11 Sobic.008G193200 expressed protein -
12 Sobic.001G176700 CBS domain containing protein, expressed -
13 Sobic.006G205000 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
14 Sobic.004G197700 expressed protein -
15 Sobic.001G167800 single-stranded DNA-binding protein, putative, expressed -
16 Sobic.003G050000 thiol-disulphide oxidoreductase DCC, putative, expressed -
17 Sobic.010G019200 - -
18 Sobic.001G374400 Heavy metal transport/detoxification superfamily protein(PubMedID : 26465154)@heavy metal-associated domain containing protein, expressed -
19 Sobic.002G176300 RING finger protein, putative, expressed -
20 Sobic.010G279100 expressed protein -


Gene co-expression network
sample Sobic006G122500 Sobic006G122500 Sobic006G049200 Sobic006G049200 Sobic006G122500--Sobic006G049200 Sobic001G252401 Sobic001G252401 Sobic006G122500--Sobic001G252401 Sobic010G006300 Sobic010G006300 Sobic006G122500--Sobic010G006300 Sobic010G162500 Sobic010G162500 Sobic006G122500--Sobic010G162500 Sobic004G289300 Sobic004G289300 Sobic006G122500--Sobic004G289300 Sobic004G342500 Sobic004G342500 Sobic006G122500--Sobic004G342500 Sobic003G285600 Sobic003G285600 Sobic006G122500--Sobic003G285600 Sobic003G403800 Sobic003G403800 Sobic006G122500--Sobic003G403800 Sobic001G193800 Sobic001G193800 Sobic006G122500--Sobic001G193800 Sobic006G049200--Sobic006G122500 Sobic010G019200 Sobic010G019200 Sobic006G049200--Sobic010G019200 Sobic004G235100 Sobic004G235100 Sobic006G049200--Sobic004G235100 Sobic007G018900 Sobic007G018900 Sobic006G049200--Sobic007G018900 Sobic006G207700 Sobic006G207700 Sobic006G049200--Sobic006G207700 Sobic006G049200--Sobic004G342500 Sobic008G094150 Sobic008G094150 Sobic006G049200--Sobic008G094150 Sobic009G191900 Sobic009G191900 Sobic006G049200--Sobic009G191900 Sobic003G080000 Sobic003G080000 Sobic006G049200--Sobic003G080000 Sobic001G252401--Sobic010G006300 Sobic001G536901 Sobic001G536901 Sobic001G252401--Sobic001G536901 Sobic001G252401--Sobic003G403800 Sobic001G252401--Sobic003G285600 Sobic007G080780 Sobic007G080780 Sobic001G252401--Sobic007G080780 Sobic001G252401--Sobic010G162500 Sobic001G252401--Sobic006G122500 Sobic008G193200 Sobic008G193200 Sobic001G252401--Sobic008G193200 Sobic005G101300 Sobic005G101300 Sobic001G252401--Sobic005G101300 Sobic010G006300--Sobic010G162500 Sobic010G006300--Sobic001G252401 Sobic010G006300--Sobic003G285600 Sobic001G176700 Sobic001G176700 Sobic010G006300--Sobic001G176700 Sobic007G028200 Sobic007G028200 Sobic010G006300--Sobic007G028200 Sobic010G006300--Sobic003G403800 Sobic010G006300--Sobic006G122500 Sobic010G006300--Sobic007G080780 Sobic001G276400 Sobic001G276400 Sobic010G006300--Sobic001G276400 Sobic010G162500--Sobic010G006300 Sobic010G162500--Sobic007G028200 Sobic010G162500--Sobic001G176700 Sobic010G162500--Sobic003G285600 Sobic007G141300 Sobic007G141300 Sobic010G162500--Sobic007G141300 Sobic010G162500--Sobic001G252401 Sobic010G162200 Sobic010G162200 Sobic010G162500--Sobic010G162200 Sobic003G097701 Sobic003G097701 Sobic010G162500--Sobic003G097701 Sobic010G263500 Sobic010G263500 Sobic010G162500--Sobic010G263500 Sobic003G214800 Sobic003G214800 Sobic004G289300--Sobic003G214800 Sobic004G289300--Sobic010G162500 Sobic004G289300--Sobic006G122500 Sobic005G191500 Sobic005G191500 Sobic004G289300--Sobic005G191500 Sobic003G310800 Sobic003G310800 Sobic004G289300--Sobic003G310800 Sobic004G289300--Sobic010G006300 Sobic010G161201 Sobic010G161201 Sobic004G289300--Sobic010G161201 Sobic010G279100 Sobic010G279100 Sobic004G289300--Sobic010G279100 Sobic004G289300--Sobic001G252401 Sobic006G204600 Sobic006G204600 Sobic004G342500--Sobic006G204600 Sobic004G342500--Sobic010G279100 Sobic002G199000 Sobic002G199000 Sobic004G342500--Sobic002G199000 Sobic001G410700 Sobic001G410700 Sobic004G342500--Sobic001G410700 Sobic004G342500--Sobic004G235100 Sobic004G342500--Sobic003G214800 Sobic001G455500 Sobic001G455500 Sobic004G342500--Sobic001G455500 Sobic004G342500--Sobic006G049200 Sobic004G342500--Sobic006G122500 Sobic003G285600--Sobic010G162200 Sobic003G285600--Sobic001G176700 Sobic003G285600--Sobic010G162500 Sobic003G285600--Sobic001G252401 Sobic003G285600--Sobic010G006300 Sobic003G050000 Sobic003G050000 Sobic003G285600--Sobic003G050000 Sobic003G285600--Sobic003G403800 Sobic003G285600--Sobic007G028200 Sobic003G285600--Sobic003G097701 Sobic006G063900 Sobic006G063900 Sobic003G403800--Sobic006G063900 Sobic003G403800--Sobic001G252401 Sobic010G201600 Sobic010G201600 Sobic003G403800--Sobic010G201600 Sobic001G167900 Sobic001G167900 Sobic003G403800--Sobic001G167900 Sobic003G403800--Sobic003G050000 Sobic002G061900 Sobic002G061900 Sobic003G403800--Sobic002G061900 Sobic004G359600 Sobic004G359600 Sobic003G403800--Sobic004G359600 Sobic004G124400 Sobic004G124400 Sobic003G403800--Sobic004G124400 Sobic003G403800--Sobic001G176700 Sobic001G193800--Sobic001G176700 Sobic001G193800--Sobic003G285600 Sobic001G193800--Sobic010G162200 Sobic001G193800--Sobic006G122500 Sobic001G193800--Sobic010G019200 Sobic001G126500 Sobic001G126500 Sobic001G193800--Sobic001G126500 Sobic001G505800 Sobic001G505800 Sobic001G193800--Sobic001G505800 Sobic001G193800--Sobic006G049200 Sobic003G339300 Sobic003G339300 Sobic001G193800--Sobic003G339300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.