Gene annotation
Transcriptome id Sobic.006G205000.1,Sobic.006G205000.2
Synonym Sb06g027610
Functional annotation aldose 1-epimerase, putative, expressed
UniProt A0A1B6PN21
Pfam PF01263
Panther DB PTHR11122 PTHR11122:SF28
NCBI CDD KOG1594; Uncharacterized enzymes related to aldose 1-epimerase
KEGG Orthology K01792; glucose-6-phosphate 1-epimerase
Gene Ontology GO:0016853; isomerase activity GO:0005975carbohydrate metabolic process


Orthologs (automatic annotation)
TAIR AT5G57330 : Galactose mutarotase-like superfamily protein
RAP-DB (Rice) LOC_Os04g51390.2,LOC_Os04g51390.1 : aldose 1-epimerase, putative, expressed
MaizeGDB (Corn) Zm00025a030925
Brachypodium -
Barley HORVU2Hr1G101360.15 , HORVU2Hr1G101360.17 , HORVU2Hr1G101360.13 , HORVU2Hr1G101360.12 , HORVU2Hr1G101360.11 , HORVU2Hr1G101360.14 , HORVU2Hr1G101360.16 , HORVU2Hr1G101360.10 , HORVU2Hr1G101360.9 , HORVU2Hr1G101360.8 , HORVU2Hr1G101360.1 , HORVU2Hr1G101360.3 , HORVU2Hr1G101360.2 , HORVU2Hr1G101360.5 , HORVU2Hr1G101360.4 , HORVU2Hr1G101360.7 , HORVU2Hr1G101360.6
Wheat TraesCS2B02G456200 , TraesCS2B02G456200 , TraesCS2B02G456200 , TraesCS2D02G432900 , TraesCS2D02G432900 , TraesCS2A02G437100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G205000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G094150 - -
2 Sobic.006G049200 violaxanthin de-epoxidase, putative, expressed K09839: VDE, violaxanthin de-epoxidase
3 Sobic.006G122500 methyltransferase domain containing protein, expressed -
4 Sobic.001G126500 - -
5 Sobic.001G193800 - -
6 Sobic.006G207700 containing DUF163, putative, expressed K00783: 23S rRNA (pseudouridine1915-N3)-methyltransferase
7 Sobic.003G403800 hydrolase, alpha/beta fold family domain containing protein, expressed -
8 Sobic.008G072400 protein kinase family protein, putative, expressed -
9 Sobic.010G019200 - -
10 Sobic.009G235500 homeodomain-related, putative, expressed -
11 Sobic.003G080000 Ser/Thr protein kinase, putative, expressed -
12 Sobic.005G057700 expressed protein -
13 Sobic.003G208100 Mo25, putative, expressed -
14 Sobic.008G157100 "BZIP transcription factor family protein, predicted target of novel-mir-617 expressed in the stems of sweet sorghum"(PubMedID : 26117170)@down-regulated TF in developmental senescence(PubMedID : 27586543)@bZIP transcription factor domain containing protein, expressed -
15 Sobic.001G476900 zinc finger protein, putative, expressed -
16 Sobic.008G005900 nodulin, putative, expressed -
17 Sobic.006G248801 - -
18 Sobic.010G138800 phosphate transporter 1, putative, expressed -
19 Sobic.009G137300 - -
20 Sobic.004G107500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@potassium channel KAT1, putative, expressed -


Gene co-expression network
sample Sobic006G205000 Sobic006G205000 Sobic008G094150 Sobic008G094150 Sobic006G205000--Sobic008G094150 Sobic006G049200 Sobic006G049200 Sobic006G205000--Sobic006G049200 Sobic006G122500 Sobic006G122500 Sobic006G205000--Sobic006G122500 Sobic001G126500 Sobic001G126500 Sobic006G205000--Sobic001G126500 Sobic001G193800 Sobic001G193800 Sobic006G205000--Sobic001G193800 Sobic006G207700 Sobic006G207700 Sobic006G205000--Sobic006G207700 Sobic003G403800 Sobic003G403800 Sobic006G205000--Sobic003G403800 Sobic008G072400 Sobic008G072400 Sobic006G205000--Sobic008G072400 Sobic010G019200 Sobic010G019200 Sobic006G205000--Sobic010G019200 Sobic008G094150--Sobic010G019200 Sobic004G100000 Sobic004G100000 Sobic008G094150--Sobic004G100000 Sobic008G005900 Sobic008G005900 Sobic008G094150--Sobic008G005900 Sobic001G087800 Sobic001G087800 Sobic008G094150--Sobic001G087800 Sobic004G023600 Sobic004G023600 Sobic008G094150--Sobic004G023600 Sobic001G300301 Sobic001G300301 Sobic008G094150--Sobic001G300301 Sobic008G094150--Sobic001G126500 Sobic004G250000 Sobic004G250000 Sobic008G094150--Sobic004G250000 Sobic008G094150--Sobic006G049200 Sobic006G049200--Sobic006G122500 Sobic006G049200--Sobic010G019200 Sobic004G235100 Sobic004G235100 Sobic006G049200--Sobic004G235100 Sobic007G018900 Sobic007G018900 Sobic006G049200--Sobic007G018900 Sobic006G049200--Sobic006G207700 Sobic004G342500 Sobic004G342500 Sobic006G049200--Sobic004G342500 Sobic006G049200--Sobic008G094150 Sobic009G191900 Sobic009G191900 Sobic006G049200--Sobic009G191900 Sobic003G080000 Sobic003G080000 Sobic006G049200--Sobic003G080000 Sobic006G122500--Sobic006G049200 Sobic001G252401 Sobic001G252401 Sobic006G122500--Sobic001G252401 Sobic010G006300 Sobic010G006300 Sobic006G122500--Sobic010G006300 Sobic010G162500 Sobic010G162500 Sobic006G122500--Sobic010G162500 Sobic004G289300 Sobic004G289300 Sobic006G122500--Sobic004G289300 Sobic006G122500--Sobic004G342500 Sobic003G285600 Sobic003G285600 Sobic006G122500--Sobic003G285600 Sobic006G122500--Sobic003G403800 Sobic006G122500--Sobic001G193800 Sobic001G126500--Sobic008G094150 Sobic001G028200 Sobic001G028200 Sobic001G126500--Sobic001G028200 Sobic001G126500--Sobic001G193800 Sobic004G208301 Sobic004G208301 Sobic001G126500--Sobic004G208301 Sobic001G176700 Sobic001G176700 Sobic001G126500--Sobic001G176700 Sobic010G162200 Sobic010G162200 Sobic001G126500--Sobic010G162200 Sobic004G319400 Sobic004G319400 Sobic001G126500--Sobic004G319400 Sobic001G126500--Sobic006G205000 Sobic005G214150 Sobic005G214150 Sobic001G126500--Sobic005G214150 Sobic001G193800--Sobic001G176700 Sobic001G193800--Sobic003G285600 Sobic001G193800--Sobic010G162200 Sobic001G193800--Sobic006G122500 Sobic001G193800--Sobic010G019200 Sobic001G193800--Sobic001G126500 Sobic001G505800 Sobic001G505800 Sobic001G193800--Sobic001G505800 Sobic001G193800--Sobic006G049200 Sobic003G339300 Sobic003G339300 Sobic001G193800--Sobic003G339300 Sobic006G207700--Sobic004G023600 Sobic002G176300 Sobic002G176300 Sobic006G207700--Sobic002G176300 Sobic004G330800 Sobic004G330800 Sobic006G207700--Sobic004G330800 Sobic006G280400 Sobic006G280400 Sobic006G207700--Sobic006G280400 Sobic001G021601 Sobic001G021601 Sobic006G207700--Sobic001G021601 Sobic006G207700--Sobic006G049200 Sobic001G353100 Sobic001G353100 Sobic006G207700--Sobic001G353100 Sobic007G028300 Sobic007G028300 Sobic006G207700--Sobic007G028300 Sobic003G340200 Sobic003G340200 Sobic006G207700--Sobic003G340200 Sobic006G063900 Sobic006G063900 Sobic003G403800--Sobic006G063900 Sobic003G403800--Sobic001G252401 Sobic010G201600 Sobic010G201600 Sobic003G403800--Sobic010G201600 Sobic001G167900 Sobic001G167900 Sobic003G403800--Sobic001G167900 Sobic003G050000 Sobic003G050000 Sobic003G403800--Sobic003G050000 Sobic002G061900 Sobic002G061900 Sobic003G403800--Sobic002G061900 Sobic004G359600 Sobic004G359600 Sobic003G403800--Sobic004G359600 Sobic004G124400 Sobic004G124400 Sobic003G403800--Sobic004G124400 Sobic003G403800--Sobic001G176700 Sobic005G106700 Sobic005G106700 Sobic008G072400--Sobic005G106700 Sobic010G093200 Sobic010G093200 Sobic008G072400--Sobic010G093200 Sobic003G106800 Sobic003G106800 Sobic008G072400--Sobic003G106800 Sobic004G327900 Sobic004G327900 Sobic008G072400--Sobic004G327900 Sobic004G166600 Sobic004G166600 Sobic008G072400--Sobic004G166600 Sobic009G212900 Sobic009G212900 Sobic008G072400--Sobic009G212900 Sobic006G244200 Sobic006G244200 Sobic008G072400--Sobic006G244200 Sobic004G145550 Sobic004G145550 Sobic008G072400--Sobic004G145550 Sobic001G123400 Sobic001G123400 Sobic008G072400--Sobic001G123400 Sobic010G019200--Sobic008G094150 Sobic010G019200--Sobic004G100000 Sobic010G019200--Sobic008G005900 Sobic010G019200--Sobic006G049200 Sobic010G019200--Sobic003G080000 Sobic010G019200--Sobic001G087800 Sobic006G128500 Sobic006G128500 Sobic010G019200--Sobic006G128500 Sobic001G470700 Sobic001G470700 Sobic010G019200--Sobic001G470700 Sobic005G173100 Sobic005G173100 Sobic010G019200--Sobic005G173100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.