Gene annotation
Transcriptome id Sobic.006G248801.1
Synonym -
Functional annotation -
UniProt A0A1Z5RFX9
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF123
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G20030 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g16940.1 : retrotransposon protein, putative, Ty1-copia subclass, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G010800 C4-dicarboxylate transporter/malic acid transport protein, expressed -
2 Sobic.010G165000 expressed protein -
3 Sobic.005G200300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@tyrosine aminotransferase, putative, expressed K00815: tyrosine aminotransferase
4 Sobic.002G298900 heat shock protein DnaJ, putative, expressed -
5 Sobic.010G149800 - -
6 Sobic.002G310900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTPase activating protein, putative, expressed -
7 Sobic.004G355900 oligopeptide transporter, putative, expressed -
8 Sobic.004G089300 ABC transporter, ATP-binding protein, putative, expressed -
9 Sobic.010G134000 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
10 Sobic.006G270000 expressed protein -
11 Sobic.007G009900 - -
12 Sobic.010G103400 MBTB10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
13 Sobic.003G127900 plastocyanin-like domain containing protein, putative, expressed -
14 Sobic.006G050050 - -
15 Sobic.002G103900 similar to Late embryogenesis abundant proteins-like(PubMedID : 29862293)@late embryogenesis abundant protein, putative, expressed -
16 Sobic.004G136400 protein phosphatase 2C, putative, expressed -
17 Sobic.002G010400 OsFBX1 - F-box domain containing protein, expressed -
18 Sobic.009G049701 - -
19 Sobic.009G123700 NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
20 Sobic.008G180600 pre-rRNA-processing protein TSR2, putative, expressed K14800: pre-rRNA-processing protein TSR2


Gene co-expression network
sample Sobic006G248801 Sobic006G248801 Sobic003G010800 Sobic003G010800 Sobic006G248801--Sobic003G010800 Sobic010G165000 Sobic010G165000 Sobic006G248801--Sobic010G165000 Sobic005G200300 Sobic005G200300 Sobic006G248801--Sobic005G200300 Sobic002G298900 Sobic002G298900 Sobic006G248801--Sobic002G298900 Sobic010G149800 Sobic010G149800 Sobic006G248801--Sobic010G149800 Sobic002G310900 Sobic002G310900 Sobic006G248801--Sobic002G310900 Sobic004G355900 Sobic004G355900 Sobic006G248801--Sobic004G355900 Sobic004G089300 Sobic004G089300 Sobic006G248801--Sobic004G089300 Sobic010G134000 Sobic010G134000 Sobic006G248801--Sobic010G134000 Sobic003G010800--Sobic010G134000 Sobic006G270000 Sobic006G270000 Sobic003G010800--Sobic006G270000 Sobic003G010800--Sobic002G310900 Sobic003G433400 Sobic003G433400 Sobic003G010800--Sobic003G433400 Sobic003G403300 Sobic003G403300 Sobic003G010800--Sobic003G403300 Sobic003G010800--Sobic010G149800 Sobic010G105000 Sobic010G105000 Sobic003G010800--Sobic010G105000 Sobic003G291800 Sobic003G291800 Sobic003G010800--Sobic003G291800 Sobic002G307800 Sobic002G307800 Sobic003G010800--Sobic002G307800 Sobic010G165000--Sobic002G310900 Sobic010G165000--Sobic006G270000 Sobic010G165000--Sobic003G010800 Sobic010G165000--Sobic010G149800 Sobic003G024400 Sobic003G024400 Sobic010G165000--Sobic003G024400 Sobic007G226500 Sobic007G226500 Sobic010G165000--Sobic007G226500 Sobic009G044700 Sobic009G044700 Sobic010G165000--Sobic009G044700 Sobic002G069000 Sobic002G069000 Sobic010G165000--Sobic002G069000 Sobic003G198900 Sobic003G198900 Sobic010G165000--Sobic003G198900 Sobic001G241401 Sobic001G241401 Sobic005G200300--Sobic001G241401 Sobic003G317000 Sobic003G317000 Sobic005G200300--Sobic003G317000 Sobic009G062600 Sobic009G062600 Sobic005G200300--Sobic009G062600 Sobic007G185801 Sobic007G185801 Sobic005G200300--Sobic007G185801 Sobic003G305500 Sobic003G305500 Sobic005G200300--Sobic003G305500 Sobic003G343000 Sobic003G343000 Sobic005G200300--Sobic003G343000 Sobic003G208900 Sobic003G208900 Sobic005G200300--Sobic003G208900 Sobic006G059100 Sobic006G059100 Sobic005G200300--Sobic006G059100 Sobic001G196400 Sobic001G196400 Sobic005G200300--Sobic001G196400 Sobic010G103400 Sobic010G103400 Sobic002G298900--Sobic010G103400 Sobic002G298900--Sobic004G355900 Sobic008G180600 Sobic008G180600 Sobic002G298900--Sobic008G180600 Sobic005G077600 Sobic005G077600 Sobic002G298900--Sobic005G077600 Sobic007G009900 Sobic007G009900 Sobic002G298900--Sobic007G009900 Sobic002G255800 Sobic002G255800 Sobic002G298900--Sobic002G255800 Sobic008G104900 Sobic008G104900 Sobic002G298900--Sobic008G104900 Sobic007G057201 Sobic007G057201 Sobic002G298900--Sobic007G057201 Sobic009G049701 Sobic009G049701 Sobic002G298900--Sobic009G049701 Sobic010G149800--Sobic006G270000 Sobic010G149800--Sobic003G024400 Sobic010G149800--Sobic005G200300 Sobic010G244300 Sobic010G244300 Sobic010G149800--Sobic010G244300 Sobic002G011900 Sobic002G011900 Sobic010G149800--Sobic002G011900 Sobic010G149800--Sobic003G010800 Sobic010G149800--Sobic001G241401 Sobic004G144800 Sobic004G144800 Sobic010G149800--Sobic004G144800 Sobic007G086900 Sobic007G086900 Sobic010G149800--Sobic007G086900 Sobic002G310900--Sobic003G010800 Sobic002G310900--Sobic003G403300 Sobic002G310900--Sobic002G307800 Sobic002G310900--Sobic010G134000 Sobic002G310900--Sobic006G270000 Sobic003G027500 Sobic003G027500 Sobic002G310900--Sobic003G027500 Sobic002G407000 Sobic002G407000 Sobic002G310900--Sobic002G407000 Sobic002G310900--Sobic010G165000 Sobic002G310900--Sobic003G433400 Sobic004G136400 Sobic004G136400 Sobic004G355900--Sobic004G136400 Sobic004G355900--Sobic008G180600 Sobic004G014900 Sobic004G014900 Sobic004G355900--Sobic004G014900 Sobic004G355900--Sobic007G057201 Sobic004G355900--Sobic009G049701 Sobic004G355900--Sobic002G255800 Sobic004G255100 Sobic004G255100 Sobic004G355900--Sobic004G255100 Sobic003G254200 Sobic003G254200 Sobic004G355900--Sobic003G254200 Sobic004G355900--Sobic005G077600 Sobic004G089300--Sobic010G244300 Sobic004G089300--Sobic010G149800 Sobic004G089300--Sobic003G010800 Sobic002G103800 Sobic002G103800 Sobic004G089300--Sobic002G103800 Sobic004G089300--Sobic010G134000 Sobic007G099900 Sobic007G099900 Sobic004G089300--Sobic007G099900 Sobic003G278600 Sobic003G278600 Sobic004G089300--Sobic003G278600 Sobic004G089300--Sobic006G270000 Sobic010G136950 Sobic010G136950 Sobic004G089300--Sobic010G136950 Sobic010G134000--Sobic003G010800 Sobic010G134000--Sobic003G433400 Sobic010G134000--Sobic003G403300 Sobic010G134000--Sobic002G310900 Sobic010G134000--Sobic002G407000 Sobic001G411200 Sobic001G411200 Sobic010G134000--Sobic001G411200 Sobic010G134000--Sobic003G291800 Sobic001G178100 Sobic001G178100 Sobic010G134000--Sobic001G178100 Sobic010G134000--Sobic006G270000
Octagon: transcription factors


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