Gene annotation
Transcriptome id Sobic.004G089300.2
Synonym ATH2, ATATH2, Sb04g007390
Functional annotation ABC transporter, ATP-binding protein, putative, expressed
UniProt A0A1Z5RLJ6
Pfam PF12698 PF00005
Panther DB PTHR19229 PTHR19229:SF127
NCBI CDD KOG0059; Lipid exporter ABCA1 and related proteins, ABC superfamily
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT3G47780 : ABC2 homolog 6
RAP-DB (Rice) LOC_Os02g11960.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a034585 , Zm00025a020217 , Zm00025a034584
Brachypodium PNT68059 , KQJ98194
Barley HORVU6Hr1G038520.38 , HORVU6Hr1G038520.39 , HORVU6Hr1G038520.34 , HORVU6Hr1G038520.35 , HORVU6Hr1G038520.36 , HORVU6Hr1G038520.37 , HORVU6Hr1G038520.30 , HORVU6Hr1G038520.31 , HORVU6Hr1G038520.32 , HORVU6Hr1G038520.33 , HORVU6Hr1G038520.16 , HORVU6Hr1G038520.17 , HORVU6Hr1G038520.14 , HORVU6Hr1G038520.15 , HORVU6Hr1G038520.12 , HORVU6Hr1G038520.13 , HORVU6Hr1G038520.10 , HORVU6Hr1G038520.11 , HORVU6Hr1G038520.18 , HORVU6Hr1G038520.19 , HORVU6Hr1G038520.4 , HORVU6Hr1G038520.5 , HORVU6Hr1G038520.6 , HORVU6Hr1G038520.1 , HORVU6Hr1G038520.2 , HORVU6Hr1G038520.3 , HORVU6Hr1G038520.8 , HORVU6Hr1G038520.9 , HORVU6Hr1G038520.45 , HORVU6Hr1G038520.44 , HORVU6Hr1G038520.47 , HORVU6Hr1G038520.46 , HORVU6Hr1G038520.40 , HORVU6Hr1G038520.43 , HORVU6Hr1G038520.48 , HORVU6Hr1G038520.28 , HORVU6Hr1G038520.27 , HORVU6Hr1G038520.26 , HORVU6Hr1G038520.25 , HORVU6Hr1G038520.24 , HORVU6Hr1G038520.23 , HORVU6Hr1G038520.22 , HORVU6Hr1G038520.21 , HORVU6Hr1G038520.20
Wheat TraesCS6B02G211300 , TraesCS6A02G183200 , TraesCS6D02G170100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G244300 - -
2 Sobic.010G149800 - -
3 Sobic.003G010800 C4-dicarboxylate transporter/malic acid transport protein, expressed -
4 Sobic.002G103800 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
5 Sobic.010G134000 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
6 Sobic.007G099900 - -
7 Sobic.003G278600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed K17471: sulfate transporter 3
8 Sobic.006G270000 expressed protein -
9 Sobic.010G136950 - -
10 Sobic.005G003600 - -
11 Sobic.006G050050 - -
12 Sobic.007G182000 hydroxymethylglutaryl-CoA synthase("PubMedID : 26759170,PubMedID : 24597475")@hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
13 Sobic.003G038400 expressed protein -
14 Sobic.004G135366 - -
15 Sobic.003G433400 OsDegp14 - Putative Deg protease homologue, expressed -
16 Sobic.007G092400 amino acid transporter, putative, expressed -
17 Sobic.005G200300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@tyrosine aminotransferase, putative, expressed K00815: tyrosine aminotransferase
18 Sobic.001G092400 - -
19 Sobic.008G190400 uridine/cytidine kinase-like 1, putative, expressed -
20 Sobic.003G008000 cyclin-T1-1, putative, expressed -


Gene co-expression network
sample Sobic004G089300 Sobic004G089300 Sobic010G244300 Sobic010G244300 Sobic004G089300--Sobic010G244300 Sobic010G149800 Sobic010G149800 Sobic004G089300--Sobic010G149800 Sobic003G010800 Sobic003G010800 Sobic004G089300--Sobic003G010800 Sobic002G103800 Sobic002G103800 Sobic004G089300--Sobic002G103800 Sobic010G134000 Sobic010G134000 Sobic004G089300--Sobic010G134000 Sobic007G099900 Sobic007G099900 Sobic004G089300--Sobic007G099900 Sobic003G278600 Sobic003G278600 Sobic004G089300--Sobic003G278600 Sobic006G270000 Sobic006G270000 Sobic004G089300--Sobic006G270000 Sobic010G136950 Sobic010G136950 Sobic004G089300--Sobic010G136950 Sobic010G244300--Sobic010G149800 Sobic002G011900 Sobic002G011900 Sobic010G244300--Sobic002G011900 Sobic010G244300--Sobic010G136950 Sobic010G244300--Sobic004G089300 Sobic002G060000 Sobic002G060000 Sobic010G244300--Sobic002G060000 Sobic010G244300--Sobic002G103800 Sobic010G244300--Sobic007G099900 Sobic003G075300 Sobic003G075300 Sobic010G244300--Sobic003G075300 Sobic005G191200 Sobic005G191200 Sobic010G244300--Sobic005G191200 Sobic010G149800--Sobic006G270000 Sobic003G024400 Sobic003G024400 Sobic010G149800--Sobic003G024400 Sobic005G200300 Sobic005G200300 Sobic010G149800--Sobic005G200300 Sobic010G149800--Sobic010G244300 Sobic010G149800--Sobic002G011900 Sobic010G149800--Sobic003G010800 Sobic001G241401 Sobic001G241401 Sobic010G149800--Sobic001G241401 Sobic004G144800 Sobic004G144800 Sobic010G149800--Sobic004G144800 Sobic007G086900 Sobic007G086900 Sobic010G149800--Sobic007G086900 Sobic003G010800--Sobic010G134000 Sobic003G010800--Sobic006G270000 Sobic002G310900 Sobic002G310900 Sobic003G010800--Sobic002G310900 Sobic003G433400 Sobic003G433400 Sobic003G010800--Sobic003G433400 Sobic003G403300 Sobic003G403300 Sobic003G010800--Sobic003G403300 Sobic003G010800--Sobic010G149800 Sobic010G105000 Sobic010G105000 Sobic003G010800--Sobic010G105000 Sobic003G291800 Sobic003G291800 Sobic003G010800--Sobic003G291800 Sobic002G307800 Sobic002G307800 Sobic003G010800--Sobic002G307800 Sobic010G114200 Sobic010G114200 Sobic002G103800--Sobic010G114200 Sobic006G150300 Sobic006G150300 Sobic002G103800--Sobic006G150300 Sobic002G103800--Sobic001G241401 Sobic007G112500 Sobic007G112500 Sobic002G103800--Sobic007G112500 Sobic005G135100 Sobic005G135100 Sobic002G103800--Sobic005G135100 Sobic004G064200 Sobic004G064200 Sobic002G103800--Sobic004G064200 Sobic007G176900 Sobic007G176900 Sobic002G103800--Sobic007G176900 Sobic004G042501 Sobic004G042501 Sobic002G103800--Sobic004G042501 Sobic006G097400 Sobic006G097400 Sobic002G103800--Sobic006G097400 Sobic010G134000--Sobic003G010800 Sobic010G134000--Sobic003G433400 Sobic010G134000--Sobic003G403300 Sobic010G134000--Sobic002G310900 Sobic002G407000 Sobic002G407000 Sobic010G134000--Sobic002G407000 Sobic001G411200 Sobic001G411200 Sobic010G134000--Sobic001G411200 Sobic010G134000--Sobic003G291800 Sobic001G178100 Sobic001G178100 Sobic010G134000--Sobic001G178100 Sobic010G134000--Sobic006G270000 Sobic003G402800 Sobic003G402800 Sobic007G099900--Sobic003G402800 Sobic008G054200 Sobic008G054200 Sobic007G099900--Sobic008G054200 Sobic002G180800 Sobic002G180800 Sobic007G099900--Sobic002G180800 Sobic007G099900--Sobic004G064200 Sobic009G206100 Sobic009G206100 Sobic007G099900--Sobic009G206100 Sobic007G099900--Sobic010G114200 Sobic007G099900--Sobic002G103800 Sobic002G074800 Sobic002G074800 Sobic007G099900--Sobic002G074800 Sobic005G048500 Sobic005G048500 Sobic007G099900--Sobic005G048500 Sobic003G278600--Sobic002G103800 Sobic003G278600--Sobic002G074800 Sobic004G213500 Sobic004G213500 Sobic003G278600--Sobic004G213500 Sobic003G278600--Sobic010G114200 Sobic003G278600--Sobic004G064200 Sobic004G176200 Sobic004G176200 Sobic003G278600--Sobic004G176200 Sobic003G278600--Sobic006G270000 Sobic003G278600--Sobic007G086900 Sobic006G143900 Sobic006G143900 Sobic003G278600--Sobic006G143900 Sobic006G270000--Sobic003G024400 Sobic009G148600 Sobic009G148600 Sobic006G270000--Sobic009G148600 Sobic006G270000--Sobic005G048500 Sobic006G270000--Sobic002G074800 Sobic006G204400 Sobic006G204400 Sobic006G270000--Sobic006G204400 Sobic006G193400 Sobic006G193400 Sobic006G270000--Sobic006G193400 Sobic006G270000--Sobic010G149800 Sobic004G228300 Sobic004G228300 Sobic006G270000--Sobic004G228300 Sobic003G198900 Sobic003G198900 Sobic006G270000--Sobic003G198900 Sobic006G050050 Sobic006G050050 Sobic010G136950--Sobic006G050050 Sobic010G136950--Sobic010G114200 Sobic010G136950--Sobic002G103800 Sobic002G350200 Sobic002G350200 Sobic010G136950--Sobic002G350200 Sobic010G136950--Sobic001G241401 Sobic002G254100 Sobic002G254100 Sobic010G136950--Sobic002G254100 Sobic010G136950--Sobic006G150300 Sobic001G225800 Sobic001G225800 Sobic010G136950--Sobic001G225800 Sobic001G110250 Sobic001G110250 Sobic010G136950--Sobic001G110250
Octagon: transcription factors


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