Gene annotation
Transcriptome id Sobic.007G092400.1
Synonym LHT1
Functional annotation amino acid transporter, putative, expressed
UniProt A0A1B6PGK5
Pfam PF03222
Panther DB PTHR22950 PTHR22950:SF235
NCBI CDD KOG1303; Amino acid transporters
KEGG Orthology -
Gene Ontology GO:0003333; amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G40780 : lysine histidine transporter 1
RAP-DB (Rice) LOC_Os08g03350.1 : amino acid transporter, putative, expressed
MaizeGDB (Corn) Zm00025a040345 , Zm00025a040343 , Zm00025a030209 , Zm00025a040337 , Zm00025a054737 , Zm00025a040338 , Zm00025a040344 , Zm00025a009656
Brachypodium PNT63500 , PNT63501 , PNT76283 , KQJ94928 , KQJ94929
Barley HORVU7Hr1G032060.4 , HORVU7Hr1G032060.5 , HORVU7Hr1G032060.2 , HORVU7Hr1G032060.3 , HORVU7Hr1G032060.1 , HORVU2Hr1G123160.6 , HORVU2Hr1G123160.4 , HORVU2Hr1G123160.3 , HORVU7Hr1G074640.12 , HORVU7Hr1G074640.13 , HORVU7Hr1G074640.10 , HORVU7Hr1G074640.11 , HORVU7Hr1G074640.16 , HORVU7Hr1G074640.17 , HORVU7Hr1G074640.14 , HORVU7Hr1G074640.15 , HORVU7Hr1G074640.18 , HORVU7Hr1G074640.19 , HORVU7Hr1G074640.2 , HORVU7Hr1G074640.3 , HORVU7Hr1G074640.4 , HORVU7Hr1G074640.5 , HORVU7Hr1G074640.6 , HORVU7Hr1G074640.7 , HORVU7Hr1G074640.23 , HORVU7Hr1G074640.22 , HORVU7Hr1G074640.21 , HORVU7Hr1G074640.27 , HORVU7Hr1G074640.26 , HORVU7Hr1G074640.25 , HORVU7Hr1G074640.24 , HORVU7Hr1G074640.9 , HORVU7Hr1G074660.6 , HORVU7Hr1G074660.7 , HORVU7Hr1G074660.4 , HORVU7Hr1G074660.5 , HORVU7Hr1G074660.2 , HORVU7Hr1G074660.3 , HORVU7Hr1G074660.1 , HORVU7Hr1G074660.8 , HORVU7Hr1G074660.9 , HORVU2Hr1G123160.2 , HORVU2Hr1G123160.1 , HORVU2Hr1G123160.7 , HORVU2Hr1G123160.5 , HORVU7Hr1G074660.10 , HORVU7Hr1G074660.11 , HORVU7Hr1G074660.12 , HORVU7Hr1G074640.8
Wheat TraesCS7B02G060400 , TraesCS7D02G157000 , TraesCS7A02G313000 , TraesCS7B02G213000 , TraesCS7A02G156600 , TraesCS7D02G309400
Populus -


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cDNA sequences
Sobic.007G092400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G410300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed -
2 Sobic.004G135366 - -
3 Sobic.002G034750 - -
4 Sobic.004G089300 ABC transporter, ATP-binding protein, putative, expressed -
5 Sobic.003G038400 expressed protein -
6 Sobic.009G085300 - -
7 Sobic.002G349900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@outer membrane protein, OMP85 family, putative, expressed -
8 Sobic.002G243300 amino acid permease family protein, putative, expressed -
9 Sobic.005G003600 - -
10 Sobic.009G044700 DTA2, putative, expressed -
11 Sobic.010G225201 - -
12 Sobic.004G349450 - -
13 Sobic.003G008000 cyclin-T1-1, putative, expressed -
14 Sobic.008G064800 - -
15 Sobic.001G453600 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
16 Sobic.001G504500 expressed protein -
17 Sobic.003G284600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX23 - F-box domain containing protein, expressed -
18 Sobic.007G049900 MYB family transcription factor, putative, expressed -
19 Sobic.001G504700 BSD domain-containing protein, putative, expressed -
20 Sobic.010G272900 - -


Gene co-expression network
sample Sobic007G092400 Sobic007G092400 Sobic003G410300 Sobic003G410300 Sobic007G092400--Sobic003G410300 Sobic004G135366 Sobic004G135366 Sobic007G092400--Sobic004G135366 Sobic002G034750 Sobic002G034750 Sobic007G092400--Sobic002G034750 Sobic004G089300 Sobic004G089300 Sobic007G092400--Sobic004G089300 Sobic003G038400 Sobic003G038400 Sobic007G092400--Sobic003G038400 Sobic009G085300 Sobic009G085300 Sobic007G092400--Sobic009G085300 Sobic002G349900 Sobic002G349900 Sobic007G092400--Sobic002G349900 Sobic002G243300 Sobic002G243300 Sobic007G092400--Sobic002G243300 Sobic005G003600 Sobic005G003600 Sobic007G092400--Sobic005G003600 Sobic003G410300--Sobic007G092400 Sobic003G410300--Sobic009G085300 Sobic009G044700 Sobic009G044700 Sobic003G410300--Sobic009G044700 Sobic003G410300--Sobic002G034750 Sobic003G008000 Sobic003G008000 Sobic003G410300--Sobic003G008000 Sobic010G104600 Sobic010G104600 Sobic003G410300--Sobic010G104600 Sobic001G453600 Sobic001G453600 Sobic003G410300--Sobic001G453600 Sobic003G410300--Sobic002G243300 Sobic003G410300--Sobic004G135366 Sobic004G135366--Sobic002G243300 Sobic004G349450 Sobic004G349450 Sobic004G135366--Sobic004G349450 Sobic009G206100 Sobic009G206100 Sobic004G135366--Sobic009G206100 Sobic007G063800 Sobic007G063800 Sobic004G135366--Sobic007G063800 Sobic008G082000 Sobic008G082000 Sobic004G135366--Sobic008G082000 Sobic002G350200 Sobic002G350200 Sobic004G135366--Sobic002G350200 Sobic008G056600 Sobic008G056600 Sobic004G135366--Sobic008G056600 Sobic007G127800 Sobic007G127800 Sobic004G135366--Sobic007G127800 Sobic010G038300 Sobic010G038300 Sobic004G135366--Sobic010G038300 Sobic010G225201 Sobic010G225201 Sobic002G034750--Sobic010G225201 Sobic002G034750--Sobic004G349450 Sobic003G212000 Sobic003G212000 Sobic002G034750--Sobic003G212000 Sobic002G034750--Sobic002G243300 Sobic003G234500 Sobic003G234500 Sobic002G034750--Sobic003G234500 Sobic008G071300 Sobic008G071300 Sobic002G034750--Sobic008G071300 Sobic006G120900 Sobic006G120900 Sobic002G034750--Sobic006G120900 Sobic002G034750--Sobic003G008000 Sobic001G504500 Sobic001G504500 Sobic002G034750--Sobic001G504500 Sobic010G244300 Sobic010G244300 Sobic004G089300--Sobic010G244300 Sobic010G149800 Sobic010G149800 Sobic004G089300--Sobic010G149800 Sobic003G010800 Sobic003G010800 Sobic004G089300--Sobic003G010800 Sobic002G103800 Sobic002G103800 Sobic004G089300--Sobic002G103800 Sobic010G134000 Sobic010G134000 Sobic004G089300--Sobic010G134000 Sobic007G099900 Sobic007G099900 Sobic004G089300--Sobic007G099900 Sobic003G278600 Sobic003G278600 Sobic004G089300--Sobic003G278600 Sobic006G270000 Sobic006G270000 Sobic004G089300--Sobic006G270000 Sobic010G136950 Sobic010G136950 Sobic004G089300--Sobic010G136950 Sobic003G038400--Sobic007G099900 Sobic008G054200 Sobic008G054200 Sobic003G038400--Sobic008G054200 Sobic002G180800 Sobic002G180800 Sobic003G038400--Sobic002G180800 Sobic006G132600 Sobic006G132600 Sobic003G038400--Sobic006G132600 Sobic003G402800 Sobic003G402800 Sobic003G038400--Sobic003G402800 Sobic010G158000 Sobic010G158000 Sobic003G038400--Sobic010G158000 Sobic003G038400--Sobic002G103800 Sobic004G064200 Sobic004G064200 Sobic003G038400--Sobic004G064200 Sobic003G385300 Sobic003G385300 Sobic003G038400--Sobic003G385300 Sobic009G085300--Sobic003G410300 Sobic009G085300--Sobic001G453600 Sobic009G085300--Sobic009G044700 Sobic010G145100 Sobic010G145100 Sobic009G085300--Sobic010G145100 Sobic007G049900 Sobic007G049900 Sobic009G085300--Sobic007G049900 Sobic006G162400 Sobic006G162400 Sobic009G085300--Sobic006G162400 Sobic006G079800 Sobic006G079800 Sobic009G085300--Sobic006G079800 Sobic005G076800 Sobic005G076800 Sobic009G085300--Sobic005G076800 Sobic001G398200 Sobic001G398200 Sobic009G085300--Sobic001G398200 Sobic003G090400 Sobic003G090400 Sobic002G349900--Sobic003G090400 Sobic003G356850 Sobic003G356850 Sobic002G349900--Sobic003G356850 Sobic002G280950 Sobic002G280950 Sobic002G349900--Sobic002G280950 Sobic008G071700 Sobic008G071700 Sobic002G349900--Sobic008G071700 Sobic005G006900 Sobic005G006900 Sobic002G349900--Sobic005G006900 Sobic004G254700 Sobic004G254700 Sobic002G349900--Sobic004G254700 Sobic002G019300 Sobic002G019300 Sobic002G349900--Sobic002G019300 Sobic009G149100 Sobic009G149100 Sobic002G349900--Sobic009G149100 Sobic004G335400 Sobic004G335400 Sobic002G349900--Sobic004G335400 Sobic002G243300--Sobic004G349450 Sobic005G055700 Sobic005G055700 Sobic002G243300--Sobic005G055700 Sobic007G112500 Sobic007G112500 Sobic002G243300--Sobic007G112500 Sobic005G043300 Sobic005G043300 Sobic002G243300--Sobic005G043300 Sobic003G014200 Sobic003G014200 Sobic002G243300--Sobic003G014200 Sobic008G076100 Sobic008G076100 Sobic002G243300--Sobic008G076100 Sobic003G111000 Sobic003G111000 Sobic002G243300--Sobic003G111000 Sobic005G185900 Sobic005G185900 Sobic002G243300--Sobic005G185900 Sobic002G073600 Sobic002G073600 Sobic002G243300--Sobic002G073600 Sobic001G539400 Sobic001G539400 Sobic005G003600--Sobic001G539400 Sobic004G046800 Sobic004G046800 Sobic005G003600--Sobic004G046800 Sobic005G003600--Sobic001G453600 Sobic008G124600 Sobic008G124600 Sobic005G003600--Sobic008G124600 Sobic003G065201 Sobic003G065201 Sobic005G003600--Sobic003G065201 Sobic001G504700 Sobic001G504700 Sobic005G003600--Sobic001G504700 Sobic005G003600--Sobic006G162400 Sobic009G229400 Sobic009G229400 Sobic005G003600--Sobic009G229400 Sobic005G003600--Sobic010G145100
Octagon: transcription factors


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