Gene annotation
| Transcriptome id | Sobic.005G200300.3,Sobic.005G200300.6,Sobic.005G200300.1,Sobic.005G200300.4,Sobic.005G200300.5,Sobic.005G200300.7,Sobic.005G200300.2 |
|---|---|
| Synonym | Sb05g025660 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543) tyrosine aminotransferase, putative, expressed |
| UniProt | A0A1Z5RJI1 , A0A1Z5RJJ6 , A0A1Z5RJK9 , A0A1B6PTP1 , A0A1B6PTM4 |
| Pfam | PF01041 |
| Panther DB | PTHR11751 PTHR11751:SF363 PTHR11751 PTHR11751:SF368 |
| NCBI CDD | KOG0259; Tyrosine aminotransferase |
| KEGG Orthology | K00815; tyrosine aminotransferase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G53970 : Tyrosine transaminase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os11g42510.1,LOC_Os11g42510.2 : tyrosine aminotransferase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a029220 |
| Brachypodium | KQJ87515 , KQJ87514 , KQJ87513 |
| Barley | HORVU4Hr1G031510.3 , HORVU4Hr1G031510.6 , HORVU4Hr1G031510.7 , HORVU4Hr1G031510.28 , HORVU4Hr1G031510.23 , HORVU4Hr1G031510.22 , HORVU4Hr1G031510.21 , HORVU4Hr1G031510.20 , HORVU4Hr1G031510.27 , HORVU4Hr1G031510.26 , HORVU4Hr1G031510.25 , HORVU4Hr1G031510.24 , HORVU4Hr1G031510.8 , HORVU4Hr1G031510.9 , HORVU4Hr1G031510.2 , HORVU4Hr1G031510.5 , HORVU4Hr1G031510.12 , HORVU4Hr1G031510.13 , HORVU4Hr1G031510.10 , HORVU4Hr1G031510.11 , HORVU4Hr1G031510.16 , HORVU4Hr1G031510.17 , HORVU4Hr1G031510.14 , HORVU4Hr1G031510.15 , HORVU4Hr1G031510.18 , HORVU4Hr1G031510.19 |
| Wheat | TraesCS4A02G145400 , TraesCS4A02G145400 , TraesCS4B02G124800 , TraesCS4B02G124800 , TraesCS4D02G153400 , TraesCS4D02G153400 , TraesCS4D02G153400 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G241401 | - | - |
| 2 | Sobic.003G317000 | BTBN12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed | - |
| 3 | Sobic.009G062600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase D, putative, expressed | K01115: phospholipase D1/2 |
| 4 | Sobic.007G185801 | - | - |
| 5 | Sobic.003G305500 | expressed protein | - |
| 6 | Sobic.003G343000 | DEFL4 - Defensin and Defensin-like DEFL family, expressed | - |
| 7 | Sobic.003G208900 | Sad1 / UNC-like C-terminal domain containing protein, putative, expressed | - |
| 8 | Sobic.006G059100 | POEI20 - Pollen Ole e I allergen and extensin family protein precursor, expressed | - |
| 9 | Sobic.001G196400 | transmembrane and coiled-coil domain-containing protein 4, putative, expressed | - |
| 10 | Sobic.002G034200 | - | - |
| 11 | Sobic.001G002400 | OsSub55 - Putative Subtilisin homologue, expressed | - |
| 12 | Sobic.002G261400 | Os9bglu31 - beta-glucosidase, dhurrinase, similar to G. max hydroxyisourate hydrolase, expressed | K01188: beta-glucosidase |
| 13 | Sobic.003G445600 | KIP1, putative, expressed | - |
| 14 | Sobic.007G161100 | ENTH domain containing protein, expressed | - |
| 15 | Sobic.004G042800 | protein kinase domain containing protein, expressed | - |
| 16 | Sobic.004G036400 | Ca exchanger 2(PubMedID : 22196357)@sodium/calcium exchanger protein, putative, expressed | K07300: chaA, Ca2+:H+ antiporter |
| 17 | Sobic.004G049300 | transporter family protein, putative, expressed | - |
| 18 | Sobic.006G164800 | eukaryotic translation initiation factor 4G, putative, expressed | K03260: translation initiation factor 4G |
| 19 | Sobic.004G062300 | fasciclin-like arabinogalactan precursor protein, putative, expressed | - |
| 20 | Sobic.004G327000 | STE_PAK_Ste20_STLK.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39 |
Gene co-expression network
Octagon: transcription factors
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