Gene annotation
Transcriptome id Sobic.006G164800.1
Synonym CUM2, EIF4G
Functional annotation eukaryotic translation initiation factor 4G, putative, expressed
UniProt A0A1B6PMC3
Pfam PF02847 PF02854
Panther DB PTHR23253 PTHR23253:SF26
NCBI CDD KOG0401; Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G)
KEGG Orthology K03260; translation initiation factor 4G
Gene Ontology GO:0005515; protein binding GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT3G60240 : eukaryotic translation initiation factor 4G
RAP-DB (Rice) LOC_Os07g36940.2 : eukaryotic translation initiation factor 4G, putative, expressed
MaizeGDB (Corn) Zm00025a056580 , Zm00025a014889 , Zm00025a056643 , Zm00025a013743 , Zm00025a051188 , Zm00025a036394 , Zm00025a048350 , Zm00025a048966
Brachypodium KQK15811 , KQK15812 , KQJ83878
Barley HORVU2Hr1G092940.14 , HORVU2Hr1G092940.15 , HORVU2Hr1G092940.16 , HORVU2Hr1G092940.17 , HORVU2Hr1G092940.10 , HORVU2Hr1G092940.11 , HORVU2Hr1G092940.12 , HORVU2Hr1G092940.13 , HORVU2Hr1G092940.18 , HORVU2Hr1G092940.8 , HORVU2Hr1G092940.9 , HORVU2Hr1G092940.6 , HORVU2Hr1G092940.7 , HORVU2Hr1G092940.4 , HORVU2Hr1G092940.5 , HORVU2Hr1G092940.2 , HORVU2Hr1G092940.3 , HORVU2Hr1G092940.1 , HORVU2Hr1G041770.1 , HORVU2Hr1G041770.2 , HORVU2Hr1G041760.2 , HORVU2Hr1G041760.3 , HORVU2Hr1G041760.1 , HORVU2Hr1G041760.4
Wheat TraesCS2D02G215300 , TraesCS2B02G235100 , TraesCS2D02G388100 , TraesCS2B02G408800 , TraesCS2B02G408800 , TraesCS2B02G408800 , TraesCS2A02G390600 , TraesCS2A02G390600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G062300 fasciclin-like arabinogalactan precursor protein, putative, expressed -
2 Sobic.007G001800 harpin-induced protein 1 domain containing protein, expressed -
3 Sobic.004G217200 Lung seven transmembrane receptor domain containing protein, putative, expressed -
4 Sobic.004G293300 zinc-binding protein, putative, expressed -
5 Sobic.001G409000 - -
6 Sobic.003G394801 - -
7 Sobic.007G167000 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
8 Sobic.003G175600 plant protein of unknown function domain containing protein, expressed -
9 Sobic.002G053800 glycosyl hydrolase family 10 protein, putative, expressed -
10 Sobic.006G282100 DNA binding protein, putative, expressed -
11 Sobic.005G220500 pollen allergen, putative, expressed -
12 Sobic.001G269800 - -
13 Sobic.002G082400 DUF567 domain containing protein, putative, expressed -
14 Sobic.001G269200 "GDSL-like lipase/acylhydrolase, is the most likely gene associated with epicuticular wax deposition."(PubMedID : 28702690)@GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.010G091800 expressed protein -
16 Sobic.001G269600 - -
17 Sobic.007G145500 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein
18 Sobic.008G053750 - -
19 Sobic.009G203900 profilin domain containing protein, expressed K05759: profilin
20 Sobic.003G445300 aquaporin protein, putative, expressed K09873: aquaporin TIP


Gene co-expression network
sample Sobic006G164800 Sobic006G164800 Sobic004G062300 Sobic004G062300 Sobic006G164800--Sobic004G062300 Sobic007G001800 Sobic007G001800 Sobic006G164800--Sobic007G001800 Sobic004G217200 Sobic004G217200 Sobic006G164800--Sobic004G217200 Sobic004G293300 Sobic004G293300 Sobic006G164800--Sobic004G293300 Sobic001G409000 Sobic001G409000 Sobic006G164800--Sobic001G409000 Sobic003G394801 Sobic003G394801 Sobic006G164800--Sobic003G394801 Sobic007G167000 Sobic007G167000 Sobic006G164800--Sobic007G167000 Sobic003G175600 Sobic003G175600 Sobic006G164800--Sobic003G175600 Sobic002G053800 Sobic002G053800 Sobic006G164800--Sobic002G053800 Sobic004G062300--Sobic006G164800 Sobic004G062300--Sobic007G167000 Sobic004G062300--Sobic007G001800 Sobic001G269600 Sobic001G269600 Sobic004G062300--Sobic001G269600 Sobic004G062300--Sobic004G217200 Sobic001G269700 Sobic001G269700 Sobic004G062300--Sobic001G269700 Sobic001G269200 Sobic001G269200 Sobic004G062300--Sobic001G269200 Sobic002G414300 Sobic002G414300 Sobic004G062300--Sobic002G414300 Sobic010G107800 Sobic010G107800 Sobic004G062300--Sobic010G107800 Sobic007G001800--Sobic001G409000 Sobic007G001800--Sobic004G217200 Sobic007G001800--Sobic006G164800 Sobic009G016900 Sobic009G016900 Sobic007G001800--Sobic009G016900 Sobic007G001800--Sobic001G269600 Sobic007G001800--Sobic001G269700 Sobic007G001800--Sobic003G394801 Sobic007G001800--Sobic002G414300 Sobic007G001800--Sobic007G167000 Sobic005G006300 Sobic005G006300 Sobic004G217200--Sobic005G006300 Sobic002G414150 Sobic002G414150 Sobic004G217200--Sobic002G414150 Sobic006G142200 Sobic006G142200 Sobic004G217200--Sobic006G142200 Sobic004G217200--Sobic003G394801 Sobic001G269400 Sobic001G269400 Sobic004G217200--Sobic001G269400 Sobic005G009500 Sobic005G009500 Sobic004G217200--Sobic005G009500 Sobic005G204500 Sobic005G204500 Sobic004G217200--Sobic005G204500 Sobic004G217200--Sobic001G269600 Sobic004G217200--Sobic001G269700 Sobic004G293300--Sobic002G053800 Sobic010G091800 Sobic010G091800 Sobic004G293300--Sobic010G091800 Sobic009G203900 Sobic009G203900 Sobic004G293300--Sobic009G203900 Sobic001G269800 Sobic001G269800 Sobic004G293300--Sobic001G269800 Sobic004G293300--Sobic003G175600 Sobic008G017500 Sobic008G017500 Sobic004G293300--Sobic008G017500 Sobic006G282100 Sobic006G282100 Sobic004G293300--Sobic006G282100 Sobic008G154300 Sobic008G154300 Sobic004G293300--Sobic008G154300 Sobic004G293300--Sobic003G394801 Sobic001G409000--Sobic007G001800 Sobic001G409000--Sobic009G016900 Sobic001G409000--Sobic004G217200 Sobic001G409000--Sobic006G164800 Sobic001G409000--Sobic004G062300 Sobic008G153700 Sobic008G153700 Sobic001G409000--Sobic008G153700 Sobic001G409000--Sobic003G394801 Sobic001G409000--Sobic002G414150 Sobic001G409000--Sobic001G269600 Sobic001G306200 Sobic001G306200 Sobic003G394801--Sobic001G306200 Sobic009G169500 Sobic009G169500 Sobic003G394801--Sobic009G169500 Sobic003G394801--Sobic005G006300 Sobic003G394801--Sobic008G154300 Sobic003G394801--Sobic005G204500 Sobic005G142400 Sobic005G142400 Sobic003G394801--Sobic005G142400 Sobic003G394801--Sobic002G414150 Sobic003G394801--Sobic010G091800 Sobic003G394801--Sobic006G142200 Sobic007G167000--Sobic001G269600 Sobic007G167000--Sobic001G269200 Sobic007G167000--Sobic010G107800 Sobic007G167000--Sobic001G269700 Sobic007G167000--Sobic002G414300 Sobic005G220500 Sobic005G220500 Sobic007G167000--Sobic005G220500 Sobic007G129800 Sobic007G129800 Sobic007G167000--Sobic007G129800 Sobic002G082400 Sobic002G082400 Sobic007G167000--Sobic002G082400 Sobic007G167000--Sobic003G175600 Sobic003G175600--Sobic005G220500 Sobic003G175600--Sobic002G082400 Sobic003G175600--Sobic009G203900 Sobic003G175600--Sobic002G053800 Sobic003G175600--Sobic004G293300 Sobic003G175600--Sobic010G091800 Sobic003G175600--Sobic007G167000 Sobic003G175600--Sobic001G269200 Sobic003G445300 Sobic003G445300 Sobic003G175600--Sobic003G445300 Sobic002G053800--Sobic010G091800 Sobic002G053800--Sobic004G293300 Sobic002G053800--Sobic008G017500 Sobic002G053800--Sobic009G203900 Sobic002G053800--Sobic008G154300 Sobic002G053800--Sobic001G269800 Sobic002G053800--Sobic003G175600 Sobic002G053800--Sobic006G282100 Sobic001G306400 Sobic001G306400 Sobic002G053800--Sobic001G306400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.