Gene annotation
Transcriptome id Sobic.004G136400.1
Synonym
Functional annotation protein phosphatase 2C, putative, expressed
UniProt A0A194YPH9
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF289
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology -
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT3G02750 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os11g22404.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a038381 , Zm00025a031415
Brachypodium KQJ88590
Barley HORVU4Hr1G044610.9 , HORVU4Hr1G044610.8 , HORVU4Hr1G044610.2 , HORVU4Hr1G044610.1 , HORVU4Hr1G044610.7 , HORVU4Hr1G044610.6 , HORVU4Hr1G044610.4 , HORVU4Hr1G044610.11 , HORVU4Hr1G044610.10
Wheat TraesCS4D02G159700 , TraesCS4B02G162100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G355900 oligopeptide transporter, putative, expressed -
2 Sobic.004G014900 csAtPR5, putative, expressed -
3 Sobic.003G254200 ATROPGEF7/ROPGEF7, putative, expressed -
4 Sobic.004G255100 nitrate-induced NOI protein, putative, expressed -
5 Sobic.008G052800 - -
6 Sobic.001G003400 heavy-metal-associated domain-containing protein, putative, expressed -
7 Sobic.007G057201 - -
8 Sobic.010G187800 expressed protein -
9 Sobic.004G123100 ATROPGEF7/ROPGEF7, putative, expressed -
10 Sobic.009G249400 protein kinase family protein, putative, expressed -
11 Sobic.010G074000 expressed protein -
12 Sobic.001G103500 gp176, putative, expressed -
13 Sobic.004G185000 STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed -
14 Sobic.002G405300 START domain containing protein, expressed -
15 Sobic.008G145500 - -
16 Sobic.009G049701 - -
17 Sobic.004G334900 vesicle-associated membrane protein, putative, expressed K08515: vesicle-associated membrane protein 7
18 Sobic.009G252000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
19 Sobic.004G080000 polygalacturonase, putative, expressed K01213: galacturan 1,4-alpha-galacturonidase
20 Sobic.001G466100 glycosyl hydrolase family 10 protein, putative, expressed -


Gene co-expression network
sample Sobic004G136400 Sobic004G136400 Sobic004G355900 Sobic004G355900 Sobic004G136400--Sobic004G355900 Sobic004G014900 Sobic004G014900 Sobic004G136400--Sobic004G014900 Sobic003G254200 Sobic003G254200 Sobic004G136400--Sobic003G254200 Sobic004G255100 Sobic004G255100 Sobic004G136400--Sobic004G255100 Sobic008G052800 Sobic008G052800 Sobic004G136400--Sobic008G052800 Sobic001G003400 Sobic001G003400 Sobic004G136400--Sobic001G003400 Sobic007G057201 Sobic007G057201 Sobic004G136400--Sobic007G057201 Sobic010G187800 Sobic010G187800 Sobic004G136400--Sobic010G187800 Sobic004G123100 Sobic004G123100 Sobic004G136400--Sobic004G123100 Sobic004G355900--Sobic004G136400 Sobic008G180600 Sobic008G180600 Sobic004G355900--Sobic008G180600 Sobic004G355900--Sobic004G014900 Sobic004G355900--Sobic007G057201 Sobic009G049701 Sobic009G049701 Sobic004G355900--Sobic009G049701 Sobic002G255800 Sobic002G255800 Sobic004G355900--Sobic002G255800 Sobic004G355900--Sobic004G255100 Sobic004G355900--Sobic003G254200 Sobic005G077600 Sobic005G077600 Sobic004G355900--Sobic005G077600 Sobic004G014900--Sobic001G003400 Sobic004G014900--Sobic003G254200 Sobic004G014900--Sobic004G136400 Sobic004G048900 Sobic004G048900 Sobic004G014900--Sobic004G048900 Sobic010G074000 Sobic010G074000 Sobic004G014900--Sobic010G074000 Sobic004G288000 Sobic004G288000 Sobic004G014900--Sobic004G288000 Sobic004G014900--Sobic004G255100 Sobic004G014900--Sobic010G187800 Sobic001G103500 Sobic001G103500 Sobic004G014900--Sobic001G103500 Sobic003G254200--Sobic010G074000 Sobic009G249400 Sobic009G249400 Sobic003G254200--Sobic009G249400 Sobic003G254200--Sobic004G048900 Sobic007G185801 Sobic007G185801 Sobic003G254200--Sobic007G185801 Sobic003G254200--Sobic008G052800 Sobic003G208900 Sobic003G208900 Sobic003G254200--Sobic003G208900 Sobic006G232700 Sobic006G232700 Sobic003G254200--Sobic006G232700 Sobic003G254200--Sobic010G187800 Sobic010G030500 Sobic010G030500 Sobic003G254200--Sobic010G030500 Sobic004G255100--Sobic003G254200 Sobic004G255100--Sobic001G003400 Sobic004G255100--Sobic009G249400 Sobic004G255100--Sobic010G074000 Sobic004G255100--Sobic004G048900 Sobic010G261900 Sobic010G261900 Sobic004G255100--Sobic010G261900 Sobic004G031900 Sobic004G031900 Sobic004G255100--Sobic004G031900 Sobic004G255100--Sobic010G187800 Sobic004G255100--Sobic004G136400 Sobic001G500900 Sobic001G500900 Sobic008G052800--Sobic001G500900 Sobic010G166600 Sobic010G166600 Sobic008G052800--Sobic010G166600 Sobic002G304300 Sobic002G304300 Sobic008G052800--Sobic002G304300 Sobic005G065300 Sobic005G065300 Sobic008G052800--Sobic005G065300 Sobic009G089200 Sobic009G089200 Sobic008G052800--Sobic009G089200 Sobic009G227500 Sobic009G227500 Sobic008G052800--Sobic009G227500 Sobic001G045400 Sobic001G045400 Sobic008G052800--Sobic001G045400 Sobic002G405300 Sobic002G405300 Sobic008G052800--Sobic002G405300 Sobic003G405800 Sobic003G405800 Sobic008G052800--Sobic003G405800 Sobic001G003400--Sobic004G255100 Sobic001G003400--Sobic004G014900 Sobic001G003400--Sobic010G261900 Sobic004G334900 Sobic004G334900 Sobic001G003400--Sobic004G334900 Sobic001G003400--Sobic004G123100 Sobic010G063700 Sobic010G063700 Sobic001G003400--Sobic010G063700 Sobic001G513400 Sobic001G513400 Sobic001G003400--Sobic001G513400 Sobic001G003400--Sobic004G031900 Sobic001G003400--Sobic010G187800 Sobic007G057201--Sobic009G049701 Sobic008G145500 Sobic008G145500 Sobic007G057201--Sobic008G145500 Sobic007G057201--Sobic008G180600 Sobic007G057201--Sobic002G255800 Sobic008G188950 Sobic008G188950 Sobic007G057201--Sobic008G188950 Sobic007G057201--Sobic004G136400 Sobic001G024100 Sobic001G024100 Sobic007G057201--Sobic001G024100 Sobic003G317000 Sobic003G317000 Sobic007G057201--Sobic003G317000 Sobic007G102900 Sobic007G102900 Sobic007G057201--Sobic007G102900 Sobic004G185000 Sobic004G185000 Sobic010G187800--Sobic004G185000 Sobic010G187800--Sobic001G513400 Sobic001G380000 Sobic001G380000 Sobic010G187800--Sobic001G380000 Sobic010G187800--Sobic002G405300 Sobic009G176200 Sobic009G176200 Sobic010G187800--Sobic009G176200 Sobic010G187800--Sobic004G123100 Sobic003G233800 Sobic003G233800 Sobic010G187800--Sobic003G233800 Sobic010G187800--Sobic009G249400 Sobic001G036200 Sobic001G036200 Sobic010G187800--Sobic001G036200 Sobic004G080000 Sobic004G080000 Sobic004G123100--Sobic004G080000 Sobic001G466100 Sobic001G466100 Sobic004G123100--Sobic001G466100 Sobic004G041800 Sobic004G041800 Sobic004G123100--Sobic004G041800 Sobic007G146300 Sobic007G146300 Sobic004G123100--Sobic007G146300 Sobic004G123100--Sobic004G334900 Sobic004G123100--Sobic001G036200 Sobic009G252000 Sobic009G252000 Sobic004G123100--Sobic009G252000 Sobic010G276200 Sobic010G276200 Sobic004G123100--Sobic010G276200 Sobic005G209300 Sobic005G209300 Sobic004G123100--Sobic005G209300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.