Gene annotation
Transcriptome id Sobic.004G123100.2
Synonym PIRF1, ROPGEF11, ATROPGEF11, Sb04g010270
Functional annotation ATROPGEF7/ROPGEF7, putative, expressed
UniProt A0A1Z5RM15
Pfam PF03759
Panther DB PTHR33101 PTHR33101:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005089; Rho guanyl-nucleotide exchange factor activity


Orthologs (automatic annotation)
TAIR AT1G52240 : RHO guanyl-nucleotide exchange factor 11
RAP-DB (Rice) LOC_Os02g17240.1 : ATROPGEF7/ROPGEF7, putative, expressed
MaizeGDB (Corn) Zm00025a019827 , Zm00025a003277 , Zm00025a027489 , Zm00025a034350 , Zm00025a039980
Brachypodium KQJ94354
Barley HORVU6Hr1G050860.3 , HORVU6Hr1G050860.2 , HORVU6Hr1G050860.1 , HORVU6Hr1G050860.7 , HORVU6Hr1G050860.6 , HORVU6Hr1G050860.5 , HORVU6Hr1G050860.4 , HORVU6Hr1G050860.9 , HORVU6Hr1G050860.8 , HORVU3Hr1G073200.10 , HORVU3Hr1G073200.1 , HORVU3Hr1G073200.3 , HORVU3Hr1G073200.2 , HORVU3Hr1G073200.5 , HORVU3Hr1G073200.4 , HORVU3Hr1G073200.7 , HORVU3Hr1G073200.6 , HORVU3Hr1G073200.9 , HORVU3Hr1G073200.8
Wheat TraesCS3A02G305500 , TraesCS3A02G305500 , TraesCS3D02G296400 , TraesCSU02G211800 , TraesCS3B02G331000 , TraesCSU02G217800 , TraesCS6A02G196000 , TraesCSU02G211700 , TraesCS6D02G183300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G080000 polygalacturonase, putative, expressed K01213: galacturan 1,4-alpha-galacturonidase
2 Sobic.001G466100 glycosyl hydrolase family 10 protein, putative, expressed -
3 Sobic.004G041800 expressed protein -
4 Sobic.007G146300 pectinesterase, putative, expressed -
5 Sobic.004G334900 vesicle-associated membrane protein, putative, expressed K08515: vesicle-associated membrane protein 7
6 Sobic.001G036200 - -
7 Sobic.009G252000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
8 Sobic.010G276200 MLO domain containing protein, putative, expressed K08472: mlo protein
9 Sobic.005G209300 GRAS family transcription factor domain containing protein, expressed -
10 Sobic.010G176400 pectate lyase precursor, putative, expressed K01728: pectate lyase
11 Sobic.002G405300 START domain containing protein, expressed -
12 Sobic.010G034300 pectate lyase precursor, putative, expressed K01728: pectate lyase
13 Sobic.009G091000 TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
14 Sobic.010G254100 protein kinase APK1B, chloroplast precursor, putative, expressed -
15 Sobic.003G329600 CAMK_CAMK_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
16 Sobic.008G097800 CAMK_CAMK_like.47 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
17 Sobic.008G099000 protein of unknown function domain containing protein, expressed -
18 Sobic.001G351600 hydrolase protein, putative, expressed -
19 Sobic.005G023600 pollen allergen Cyn d 23, putative, expressed -
20 Sobic.004G185000 STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed -


Gene co-expression network
sample Sobic004G123100 Sobic004G123100 Sobic004G080000 Sobic004G080000 Sobic004G123100--Sobic004G080000 Sobic001G466100 Sobic001G466100 Sobic004G123100--Sobic001G466100 Sobic004G041800 Sobic004G041800 Sobic004G123100--Sobic004G041800 Sobic007G146300 Sobic007G146300 Sobic004G123100--Sobic007G146300 Sobic004G334900 Sobic004G334900 Sobic004G123100--Sobic004G334900 Sobic001G036200 Sobic001G036200 Sobic004G123100--Sobic001G036200 Sobic009G252000 Sobic009G252000 Sobic004G123100--Sobic009G252000 Sobic010G276200 Sobic010G276200 Sobic004G123100--Sobic010G276200 Sobic005G209300 Sobic005G209300 Sobic004G123100--Sobic005G209300 Sobic004G080000--Sobic004G041800 Sobic004G080000--Sobic007G146300 Sobic004G080000--Sobic001G466100 Sobic004G080000--Sobic010G276200 Sobic005G023600 Sobic005G023600 Sobic004G080000--Sobic005G023600 Sobic004G080000--Sobic005G209300 Sobic010G176400 Sobic010G176400 Sobic004G080000--Sobic010G176400 Sobic004G080000--Sobic004G123100 Sobic003G329600 Sobic003G329600 Sobic004G080000--Sobic003G329600 Sobic001G466100--Sobic009G252000 Sobic009G091000 Sobic009G091000 Sobic001G466100--Sobic009G091000 Sobic010G034300 Sobic010G034300 Sobic001G466100--Sobic010G034300 Sobic001G466100--Sobic004G041800 Sobic010G254100 Sobic010G254100 Sobic001G466100--Sobic010G254100 Sobic008G097800 Sobic008G097800 Sobic001G466100--Sobic008G097800 Sobic007G221932 Sobic007G221932 Sobic001G466100--Sobic007G221932 Sobic001G466100--Sobic001G036200 Sobic001G466100--Sobic010G176400 Sobic004G041800--Sobic004G080000 Sobic004G041800--Sobic001G466100 Sobic004G041800--Sobic007G146300 Sobic004G041800--Sobic010G276200 Sobic004G041800--Sobic005G209300 Sobic004G041800--Sobic010G034300 Sobic004G041800--Sobic010G176400 Sobic004G041800--Sobic009G252000 Sobic004G041800--Sobic009G091000 Sobic007G146300--Sobic004G080000 Sobic007G146300--Sobic004G041800 Sobic007G146300--Sobic010G276200 Sobic007G146300--Sobic005G023600 Sobic007G146300--Sobic005G209300 Sobic007G146300--Sobic001G466100 Sobic001G024250 Sobic001G024250 Sobic007G146300--Sobic001G024250 Sobic007G146300--Sobic010G176400 Sobic006G105500 Sobic006G105500 Sobic007G146300--Sobic006G105500 Sobic004G334900--Sobic006G105500 Sobic004G334900--Sobic010G176400 Sobic010G089900 Sobic010G089900 Sobic004G334900--Sobic010G089900 Sobic004G334900--Sobic003G329600 Sobic008G099000 Sobic008G099000 Sobic004G334900--Sobic008G099000 Sobic010G151575 Sobic010G151575 Sobic004G334900--Sobic010G151575 Sobic001G539600 Sobic001G539600 Sobic004G334900--Sobic001G539600 Sobic003G255400 Sobic003G255400 Sobic004G334900--Sobic003G255400 Sobic006G193700 Sobic006G193700 Sobic004G334900--Sobic006G193700 Sobic001G036200--Sobic010G254100 Sobic001G036200--Sobic009G091000 Sobic001G036200--Sobic009G252000 Sobic001G036200--Sobic007G221932 Sobic001G036200--Sobic010G034300 Sobic001G036200--Sobic008G097800 Sobic001G036200--Sobic001G466100 Sobic001G351600 Sobic001G351600 Sobic001G036200--Sobic001G351600 Sobic004G336401 Sobic004G336401 Sobic001G036200--Sobic004G336401 Sobic009G252000--Sobic009G091000 Sobic009G252000--Sobic007G221932 Sobic009G252000--Sobic008G097800 Sobic009G252000--Sobic010G034300 Sobic009G252000--Sobic010G254100 Sobic009G252000--Sobic004G336401 Sobic009G252000--Sobic001G466100 Sobic005G035200 Sobic005G035200 Sobic009G252000--Sobic005G035200 Sobic002G145400 Sobic002G145400 Sobic009G252000--Sobic002G145400 Sobic010G276200--Sobic004G080000 Sobic010G276200--Sobic004G041800 Sobic010G276200--Sobic007G146300 Sobic010G276200--Sobic005G023600 Sobic010G276200--Sobic001G466100 Sobic010G276200--Sobic010G176400 Sobic010G276200--Sobic006G105500 Sobic010G276200--Sobic001G024250 Sobic010G276200--Sobic010G089900 Sobic005G209300--Sobic004G041800 Sobic005G209300--Sobic004G080000 Sobic004G331500 Sobic004G331500 Sobic005G209300--Sobic004G331500 Sobic005G209300--Sobic001G466100 Sobic005G209300--Sobic007G146300 Sobic005G209300--Sobic010G034300 Sobic009G165900 Sobic009G165900 Sobic005G209300--Sobic009G165900 Sobic009G166000 Sobic009G166000 Sobic005G209300--Sobic009G166000 Sobic005G209300--Sobic010G254100
Octagon: transcription factors


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