Gene annotation
Transcriptome id Sobic.010G034300.1
Synonym Sb10g003090
Functional annotation pectate lyase precursor, putative, expressed
UniProt A0A1W0VRA4
Pfam PF00544 PF04431
Panther DB PTHR31683:SF7 PTHR31683
NCBI CDD -
KEGG Orthology K01728; pectate lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G15110 : Pectate lyase family protein
RAP-DB (Rice) LOC_Os06g05209.1 : pectate lyase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a041505 , Zm00025a042286 , Zm00025a050050 , Zm00025a034576
Brachypodium KQK17868
Barley HORVU7Hr1G085860.1 , HORVU7Hr1G085860.3 , HORVU7Hr1G019500.1
Wheat TraesCS7D02G356700 , TraesCS7B02G261700 , TraesCS7A02G365700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G034300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G252000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
2 Sobic.010G254100 protein kinase APK1B, chloroplast precursor, putative, expressed -
3 Sobic.008G097800 CAMK_CAMK_like.47 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
4 Sobic.009G091000 TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
5 Sobic.004G336401 - -
6 Sobic.007G221932 - -
7 Sobic.001G466100 glycosyl hydrolase family 10 protein, putative, expressed -
8 Sobic.002G145400 octicosapeptide/Phox/Bem1p, putative, expressed -
9 Sobic.005G035200 - -
10 Sobic.001G036200 - -
11 Sobic.001G351600 hydrolase protein, putative, expressed -
12 Sobic.009G165900 protein kinase APK1B, chloroplast precursor, putative, expressed -
13 Sobic.001G202900 expressed protein -
14 Sobic.004G024800 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
15 Sobic.007G080100 DNA binding protein, putative, expressed -
16 Sobic.004G331500 similar to Cation-transporting ATPase(PubMedID : 29862293)@ATPase 8, plasma membrane-type, putative, expressed K01535: PMA1, H+-transporting ATPase
17 Sobic.008G011901 - K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
18 Sobic.005G023400 pollen allergen Cyn d 23, putative, expressed -
19 Sobic.001G539880 - -
20 Sobic.008G099000 protein of unknown function domain containing protein, expressed -


Gene co-expression network
sample Sobic010G034300 Sobic010G034300 Sobic009G252000 Sobic009G252000 Sobic010G034300--Sobic009G252000 Sobic010G254100 Sobic010G254100 Sobic010G034300--Sobic010G254100 Sobic008G097800 Sobic008G097800 Sobic010G034300--Sobic008G097800 Sobic009G091000 Sobic009G091000 Sobic010G034300--Sobic009G091000 Sobic004G336401 Sobic004G336401 Sobic010G034300--Sobic004G336401 Sobic007G221932 Sobic007G221932 Sobic010G034300--Sobic007G221932 Sobic001G466100 Sobic001G466100 Sobic010G034300--Sobic001G466100 Sobic002G145400 Sobic002G145400 Sobic010G034300--Sobic002G145400 Sobic005G035200 Sobic005G035200 Sobic010G034300--Sobic005G035200 Sobic009G252000--Sobic009G091000 Sobic009G252000--Sobic007G221932 Sobic009G252000--Sobic008G097800 Sobic009G252000--Sobic010G034300 Sobic009G252000--Sobic010G254100 Sobic009G252000--Sobic004G336401 Sobic009G252000--Sobic001G466100 Sobic009G252000--Sobic005G035200 Sobic009G252000--Sobic002G145400 Sobic010G254100--Sobic004G336401 Sobic010G254100--Sobic008G097800 Sobic010G254100--Sobic010G034300 Sobic010G254100--Sobic009G252000 Sobic010G254100--Sobic007G221932 Sobic010G254100--Sobic009G091000 Sobic010G254100--Sobic005G035200 Sobic010G254100--Sobic002G145400 Sobic001G036200 Sobic001G036200 Sobic010G254100--Sobic001G036200 Sobic008G097800--Sobic007G221932 Sobic008G097800--Sobic004G336401 Sobic008G097800--Sobic009G091000 Sobic008G097800--Sobic009G252000 Sobic008G097800--Sobic010G254100 Sobic008G097800--Sobic010G034300 Sobic008G097800--Sobic005G035200 Sobic008G097800--Sobic002G145400 Sobic004G024800 Sobic004G024800 Sobic008G097800--Sobic004G024800 Sobic009G091000--Sobic009G252000 Sobic009G091000--Sobic007G221932 Sobic009G091000--Sobic008G097800 Sobic009G091000--Sobic010G034300 Sobic009G091000--Sobic010G254100 Sobic009G091000--Sobic004G336401 Sobic009G091000--Sobic001G466100 Sobic001G351600 Sobic001G351600 Sobic009G091000--Sobic001G351600 Sobic009G091000--Sobic005G035200 Sobic004G336401--Sobic010G254100 Sobic004G336401--Sobic008G097800 Sobic004G336401--Sobic005G035200 Sobic004G336401--Sobic002G145400 Sobic004G336401--Sobic010G034300 Sobic004G336401--Sobic007G221932 Sobic004G336401--Sobic009G252000 Sobic004G336401--Sobic009G091000 Sobic004G336401--Sobic004G024800 Sobic007G221932--Sobic009G091000 Sobic007G221932--Sobic008G097800 Sobic007G221932--Sobic009G252000 Sobic007G221932--Sobic005G035200 Sobic007G221932--Sobic002G145400 Sobic007G221932--Sobic004G336401 Sobic007G221932--Sobic010G254100 Sobic007G221932--Sobic010G034300 Sobic007G080100 Sobic007G080100 Sobic007G221932--Sobic007G080100 Sobic001G466100--Sobic009G252000 Sobic001G466100--Sobic009G091000 Sobic001G466100--Sobic010G034300 Sobic004G041800 Sobic004G041800 Sobic001G466100--Sobic004G041800 Sobic001G466100--Sobic010G254100 Sobic001G466100--Sobic008G097800 Sobic001G466100--Sobic007G221932 Sobic001G466100--Sobic001G036200 Sobic010G176400 Sobic010G176400 Sobic001G466100--Sobic010G176400 Sobic002G145400--Sobic005G035200 Sobic002G145400--Sobic008G097800 Sobic002G145400--Sobic004G336401 Sobic002G145400--Sobic007G221932 Sobic002G145400--Sobic004G024800 Sobic002G145400--Sobic010G254100 Sobic002G145400--Sobic007G080100 Sobic002G145400--Sobic009G091000 Sobic003G195400 Sobic003G195400 Sobic002G145400--Sobic003G195400 Sobic005G035200--Sobic004G024800 Sobic005G035200--Sobic002G145400 Sobic005G035200--Sobic004G336401 Sobic005G035200--Sobic007G221932 Sobic001G539880 Sobic001G539880 Sobic005G035200--Sobic001G539880 Sobic005G035200--Sobic008G097800 Sobic005G035200--Sobic003G195400 Sobic005G035200--Sobic007G080100 Sobic007G148233 Sobic007G148233 Sobic005G035200--Sobic007G148233
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.