Gene annotation
Transcriptome id Sobic.004G334900.1
Synonym Sb04g036310, VAMP711, ATVAMP711
Functional annotation vesicle-associated membrane protein, putative, expressed
UniProt C5XV36
Pfam PF13774 PF00957
Panther DB PTHR21136 PTHR21136:SF104
NCBI CDD KOG0859; Synaptobrevin/VAMP-like protein
KEGG Orthology K08515; vesicle-associated membrane protein 7
Gene Ontology GO:0016192; vesicle-mediated transport GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G11150 : vesicle-associated membrane protein 713
RAP-DB (Rice) LOC_Os02g55990.1 : vesicle-associated membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a042860 , Zm00025a022508
Brachypodium KQK01209 , PNT76406 , PNT69382
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G334900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G105500 pectinesterase, putative, expressed -
2 Sobic.010G176400 pectate lyase precursor, putative, expressed K01728: pectate lyase
3 Sobic.010G089900 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
4 Sobic.003G329600 CAMK_CAMK_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
5 Sobic.008G099000 protein of unknown function domain containing protein, expressed -
6 Sobic.010G151575 - -
7 Sobic.001G539600 expansin precursor, putative, expressed -
8 Sobic.003G255400 glyoxal oxidase-related, putative, expressed -
9 Sobic.006G193700 DUF581 domain containing protein, expressed -
10 Sobic.002G273200 kinesin motor domain containing protein, expressed K11498: centromeric protein E
11 Sobic.004G080000 polygalacturonase, putative, expressed K01213: galacturan 1,4-alpha-galacturonidase
12 Sobic.004G041800 expressed protein -
13 Sobic.002G224000 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
14 Sobic.005G023600 pollen allergen Cyn d 23, putative, expressed -
15 Sobic.004G359900 expressed protein -
16 Sobic.001G539940 - -
17 Sobic.001G466100 glycosyl hydrolase family 10 protein, putative, expressed -
18 Sobic.010G141001 - -
19 Sobic.004G222400 DEF7 - Defensin and Defensin-like DEFL family, expressed -
20 Sobic.010G276200 MLO domain containing protein, putative, expressed K08472: mlo protein


Gene co-expression network
sample Sobic004G334900 Sobic004G334900 Sobic006G105500 Sobic006G105500 Sobic004G334900--Sobic006G105500 Sobic010G176400 Sobic010G176400 Sobic004G334900--Sobic010G176400 Sobic010G089900 Sobic010G089900 Sobic004G334900--Sobic010G089900 Sobic003G329600 Sobic003G329600 Sobic004G334900--Sobic003G329600 Sobic008G099000 Sobic008G099000 Sobic004G334900--Sobic008G099000 Sobic010G151575 Sobic010G151575 Sobic004G334900--Sobic010G151575 Sobic001G539600 Sobic001G539600 Sobic004G334900--Sobic001G539600 Sobic003G255400 Sobic003G255400 Sobic004G334900--Sobic003G255400 Sobic006G193700 Sobic006G193700 Sobic004G334900--Sobic006G193700 Sobic006G105500--Sobic010G151575 Sobic004G359900 Sobic004G359900 Sobic006G105500--Sobic004G359900 Sobic002G224000 Sobic002G224000 Sobic006G105500--Sobic002G224000 Sobic006G105500--Sobic010G089900 Sobic006G105500--Sobic006G193700 Sobic004G197200 Sobic004G197200 Sobic006G105500--Sobic004G197200 Sobic001G539940 Sobic001G539940 Sobic006G105500--Sobic001G539940 Sobic002G007900 Sobic002G007900 Sobic006G105500--Sobic002G007900 Sobic005G023600 Sobic005G023600 Sobic006G105500--Sobic005G023600 Sobic010G176400--Sobic003G329600 Sobic010G141001 Sobic010G141001 Sobic010G176400--Sobic010G141001 Sobic010G176400--Sobic003G255400 Sobic004G222400 Sobic004G222400 Sobic010G176400--Sobic004G222400 Sobic010G176400--Sobic001G539600 Sobic010G176400--Sobic008G099000 Sobic010G176400--Sobic010G089900 Sobic001G466100 Sobic001G466100 Sobic010G176400--Sobic001G466100 Sobic002G273200 Sobic002G273200 Sobic010G176400--Sobic002G273200 Sobic010G089900--Sobic003G329600 Sobic010G089900--Sobic001G539600 Sobic010G089900--Sobic010G176400 Sobic010G089900--Sobic003G255400 Sobic010G089900--Sobic001G539940 Sobic010G089900--Sobic002G224000 Sobic010G089900--Sobic010G151575 Sobic010G089900--Sobic006G105500 Sobic010G089900--Sobic002G273200 Sobic003G329600--Sobic010G176400 Sobic003G329600--Sobic003G255400 Sobic003G329600--Sobic010G141001 Sobic003G329600--Sobic001G539600 Sobic003G329600--Sobic004G222400 Sobic003G329600--Sobic010G089900 Sobic003G329600--Sobic008G099000 Sobic003G329600--Sobic002G273200 Sobic003G329600--Sobic001G466100 Sobic008G099000--Sobic004G222400 Sobic008G099000--Sobic010G141001 Sobic008G099000--Sobic003G329600 Sobic008G099000--Sobic010G176400 Sobic008G099000--Sobic003G255400 Sobic008G099000--Sobic001G539600 Sobic009G091000 Sobic009G091000 Sobic008G099000--Sobic009G091000 Sobic007G221932 Sobic007G221932 Sobic008G099000--Sobic007G221932 Sobic009G252000 Sobic009G252000 Sobic008G099000--Sobic009G252000 Sobic010G151575--Sobic004G359900 Sobic010G151575--Sobic006G105500 Sobic010G151575--Sobic002G224000 Sobic010G151575--Sobic004G197200 Sobic010G151575--Sobic001G539940 Sobic010G151575--Sobic010G089900 Sobic010G151575--Sobic002G007900 Sobic010G151575--Sobic006G193700 Sobic002G121800 Sobic002G121800 Sobic010G151575--Sobic002G121800 Sobic001G539600--Sobic003G255400 Sobic001G539600--Sobic003G329600 Sobic001G539600--Sobic010G141001 Sobic001G539600--Sobic010G176400 Sobic001G539600--Sobic010G089900 Sobic001G539600--Sobic002G273200 Sobic001G539600--Sobic004G222400 Sobic001G539600--Sobic001G539940 Sobic001G539600--Sobic008G099000 Sobic003G255400--Sobic001G539600 Sobic003G255400--Sobic010G141001 Sobic003G255400--Sobic003G329600 Sobic003G255400--Sobic010G176400 Sobic003G255400--Sobic004G222400 Sobic003G255400--Sobic010G089900 Sobic003G255400--Sobic002G273200 Sobic003G255400--Sobic008G099000 Sobic003G255400--Sobic001G539940 Sobic006G193700--Sobic004G359900 Sobic006G193700--Sobic006G105500 Sobic006G193700--Sobic010G151575 Sobic006G193700--Sobic005G023600 Sobic006G193700--Sobic002G224000 Sobic005G212900 Sobic005G212900 Sobic006G193700--Sobic005G212900 Sobic006G193700--Sobic004G197200 Sobic006G193700--Sobic002G121800 Sobic006G193700--Sobic002G007900
Octagon: transcription factors


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