Gene annotation
Transcriptome id Sobic.004G080000.2
Synonym Sb04g006610
Functional annotation polygalacturonase, putative, expressed
UniProt A0A1Z5RLD8
Pfam PF00295
Panther DB PTHR31375 PTHR31375:SF17
NCBI CDD -
KEGG Orthology K01213; galacturan 1,4-alpha-galacturonidase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004650polygalacturonase activity


Orthologs (automatic annotation)
TAIR AT3G07820 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os02g10300.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a042146 , Zm00025a042142 , Zm00025a042143 , Zm00025a019631 , Zm00025a019627 , Zm00025a019626 , Zm00025a058207 , Zm00025a034655 , Zm00025a042138 , Zm00025a042139 , Zm00025a042132 , Zm00025a042131 , Zm00025a042137 , Zm00025a042152 , Zm00025a042346 , Zm00025a058214
Brachypodium KQJ93863 , KQK18286
Barley HORVU6Hr1G033360.1 , HORVU7Hr1G094750.1 , HORVU7Hr1G094750.2
Wheat TraesCS6B02G192300 , TraesCS7B02G304500 , TraesCS6A02G159000 , TraesCS6D02G153500 , TraesCS7B02G304400
Populus -


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cDNA sequences
Sobic.004G080000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G041800 expressed protein -
2 Sobic.007G146300 pectinesterase, putative, expressed -
3 Sobic.001G466100 glycosyl hydrolase family 10 protein, putative, expressed -
4 Sobic.010G276200 MLO domain containing protein, putative, expressed K08472: mlo protein
5 Sobic.005G023600 pollen allergen Cyn d 23, putative, expressed -
6 Sobic.005G209300 GRAS family transcription factor domain containing protein, expressed -
7 Sobic.010G176400 pectate lyase precursor, putative, expressed K01728: pectate lyase
8 Sobic.004G123100 ATROPGEF7/ROPGEF7, putative, expressed -
9 Sobic.003G329600 CAMK_CAMK_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
10 Sobic.010G034300 pectate lyase precursor, putative, expressed K01728: pectate lyase
11 Sobic.009G252000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
12 Sobic.010G089900 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
13 Sobic.009G091000 TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
14 Sobic.001G024250 - -
15 Sobic.004G334900 vesicle-associated membrane protein, putative, expressed K08515: vesicle-associated membrane protein 7
16 Sobic.006G105500 pectinesterase, putative, expressed -
17 Sobic.001G036200 - -
18 Sobic.008G099000 protein of unknown function domain containing protein, expressed -
19 Sobic.010G254100 protein kinase APK1B, chloroplast precursor, putative, expressed -
20 Sobic.008G097800 CAMK_CAMK_like.47 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase


Gene co-expression network
sample Sobic004G080000 Sobic004G080000 Sobic004G041800 Sobic004G041800 Sobic004G080000--Sobic004G041800 Sobic007G146300 Sobic007G146300 Sobic004G080000--Sobic007G146300 Sobic001G466100 Sobic001G466100 Sobic004G080000--Sobic001G466100 Sobic010G276200 Sobic010G276200 Sobic004G080000--Sobic010G276200 Sobic005G023600 Sobic005G023600 Sobic004G080000--Sobic005G023600 Sobic005G209300 Sobic005G209300 Sobic004G080000--Sobic005G209300 Sobic010G176400 Sobic010G176400 Sobic004G080000--Sobic010G176400 Sobic004G123100 Sobic004G123100 Sobic004G080000--Sobic004G123100 Sobic003G329600 Sobic003G329600 Sobic004G080000--Sobic003G329600 Sobic004G041800--Sobic004G080000 Sobic004G041800--Sobic001G466100 Sobic004G041800--Sobic007G146300 Sobic004G041800--Sobic010G276200 Sobic004G041800--Sobic005G209300 Sobic010G034300 Sobic010G034300 Sobic004G041800--Sobic010G034300 Sobic004G041800--Sobic010G176400 Sobic009G252000 Sobic009G252000 Sobic004G041800--Sobic009G252000 Sobic009G091000 Sobic009G091000 Sobic004G041800--Sobic009G091000 Sobic007G146300--Sobic004G080000 Sobic007G146300--Sobic004G041800 Sobic007G146300--Sobic010G276200 Sobic007G146300--Sobic005G023600 Sobic007G146300--Sobic005G209300 Sobic007G146300--Sobic001G466100 Sobic001G024250 Sobic001G024250 Sobic007G146300--Sobic001G024250 Sobic007G146300--Sobic010G176400 Sobic006G105500 Sobic006G105500 Sobic007G146300--Sobic006G105500 Sobic001G466100--Sobic009G252000 Sobic001G466100--Sobic009G091000 Sobic001G466100--Sobic010G034300 Sobic001G466100--Sobic004G041800 Sobic010G254100 Sobic010G254100 Sobic001G466100--Sobic010G254100 Sobic008G097800 Sobic008G097800 Sobic001G466100--Sobic008G097800 Sobic007G221932 Sobic007G221932 Sobic001G466100--Sobic007G221932 Sobic001G036200 Sobic001G036200 Sobic001G466100--Sobic001G036200 Sobic001G466100--Sobic010G176400 Sobic010G276200--Sobic004G080000 Sobic010G276200--Sobic004G041800 Sobic010G276200--Sobic007G146300 Sobic010G276200--Sobic005G023600 Sobic010G276200--Sobic001G466100 Sobic010G276200--Sobic010G176400 Sobic010G276200--Sobic006G105500 Sobic010G276200--Sobic001G024250 Sobic010G089900 Sobic010G089900 Sobic010G276200--Sobic010G089900 Sobic006G193700 Sobic006G193700 Sobic005G023600--Sobic006G193700 Sobic005G023600--Sobic006G105500 Sobic004G359900 Sobic004G359900 Sobic005G023600--Sobic004G359900 Sobic010G151575 Sobic010G151575 Sobic005G023600--Sobic010G151575 Sobic005G023600--Sobic007G146300 Sobic005G023600--Sobic010G276200 Sobic005G023600--Sobic004G080000 Sobic005G023600--Sobic010G089900 Sobic002G224000 Sobic002G224000 Sobic005G023600--Sobic002G224000 Sobic005G209300--Sobic004G041800 Sobic005G209300--Sobic004G080000 Sobic004G331500 Sobic004G331500 Sobic005G209300--Sobic004G331500 Sobic005G209300--Sobic001G466100 Sobic005G209300--Sobic007G146300 Sobic005G209300--Sobic010G034300 Sobic009G165900 Sobic009G165900 Sobic005G209300--Sobic009G165900 Sobic009G166000 Sobic009G166000 Sobic005G209300--Sobic009G166000 Sobic005G209300--Sobic010G254100 Sobic010G176400--Sobic003G329600 Sobic010G141001 Sobic010G141001 Sobic010G176400--Sobic010G141001 Sobic003G255400 Sobic003G255400 Sobic010G176400--Sobic003G255400 Sobic004G222400 Sobic004G222400 Sobic010G176400--Sobic004G222400 Sobic001G539600 Sobic001G539600 Sobic010G176400--Sobic001G539600 Sobic008G099000 Sobic008G099000 Sobic010G176400--Sobic008G099000 Sobic010G176400--Sobic010G089900 Sobic010G176400--Sobic001G466100 Sobic002G273200 Sobic002G273200 Sobic010G176400--Sobic002G273200 Sobic004G123100--Sobic004G080000 Sobic004G123100--Sobic001G466100 Sobic004G123100--Sobic004G041800 Sobic004G123100--Sobic007G146300 Sobic004G334900 Sobic004G334900 Sobic004G123100--Sobic004G334900 Sobic004G123100--Sobic001G036200 Sobic004G123100--Sobic009G252000 Sobic004G123100--Sobic010G276200 Sobic004G123100--Sobic005G209300 Sobic003G329600--Sobic010G176400 Sobic003G329600--Sobic003G255400 Sobic003G329600--Sobic010G141001 Sobic003G329600--Sobic001G539600 Sobic003G329600--Sobic004G222400 Sobic003G329600--Sobic010G089900 Sobic003G329600--Sobic008G099000 Sobic003G329600--Sobic002G273200 Sobic003G329600--Sobic001G466100
Octagon: transcription factors


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