Gene annotation
Transcriptome id Sobic.010G176400.1
Synonym Sb10g022830
Functional annotation pectate lyase precursor, putative, expressed
UniProt C5Z561
Pfam PF04431 PF00544
Panther DB PTHR31683 PTHR31683:SF27
NCBI CDD -
KEGG Orthology K01728; pectate lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G15110 : Pectate lyase family protein
RAP-DB (Rice) LOC_Os06g38510.2 : pectate lyase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a041505 , Zm00025a042286 , Zm00025a050050 , Zm00025a034576 , Zm00025a055690 , Zm00025a051171
Brachypodium KQJ94020 , KQK17868
Barley HORVU6Hr1G038630.1 , HORVU6Hr1G027330.1 , HORVU7Hr1G085860.1 , HORVU7Hr1G085860.3
Wheat TraesCS6D02G129200 , TraesCS6B02G168400 , TraesCS6A02G184500 , TraesCS6A02G184500 , TraesCS7D02G356700 , TraesCS7B02G261700 , TraesCS6A02G139800 , TraesCS6B02G211900 , TraesCS6D02G170500 , TraesCS7A02G365700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G176400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G329600 CAMK_CAMK_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
2 Sobic.010G141001 - -
3 Sobic.003G255400 glyoxal oxidase-related, putative, expressed -
4 Sobic.004G222400 DEF7 - Defensin and Defensin-like DEFL family, expressed -
5 Sobic.001G539600 expansin precursor, putative, expressed -
6 Sobic.008G099000 protein of unknown function domain containing protein, expressed -
7 Sobic.010G089900 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
8 Sobic.001G466100 glycosyl hydrolase family 10 protein, putative, expressed -
9 Sobic.002G273200 kinesin motor domain containing protein, expressed K11498: centromeric protein E
10 Sobic.009G091000 TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
11 Sobic.009G252000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
12 Sobic.001G539940 - -
13 Sobic.007G221932 - -
14 Sobic.006G105500 pectinesterase, putative, expressed -
15 Sobic.001G351600 hydrolase protein, putative, expressed -
16 Sobic.010G151575 - -
17 Sobic.002G224000 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
18 Sobic.004G041800 expressed protein -
19 Sobic.004G080000 polygalacturonase, putative, expressed K01213: galacturan 1,4-alpha-galacturonidase
20 Sobic.010G034300 pectate lyase precursor, putative, expressed K01728: pectate lyase


Gene co-expression network
sample Sobic010G176400 Sobic010G176400 Sobic003G329600 Sobic003G329600 Sobic010G176400--Sobic003G329600 Sobic010G141001 Sobic010G141001 Sobic010G176400--Sobic010G141001 Sobic003G255400 Sobic003G255400 Sobic010G176400--Sobic003G255400 Sobic004G222400 Sobic004G222400 Sobic010G176400--Sobic004G222400 Sobic001G539600 Sobic001G539600 Sobic010G176400--Sobic001G539600 Sobic008G099000 Sobic008G099000 Sobic010G176400--Sobic008G099000 Sobic010G089900 Sobic010G089900 Sobic010G176400--Sobic010G089900 Sobic001G466100 Sobic001G466100 Sobic010G176400--Sobic001G466100 Sobic002G273200 Sobic002G273200 Sobic010G176400--Sobic002G273200 Sobic003G329600--Sobic010G176400 Sobic003G329600--Sobic003G255400 Sobic003G329600--Sobic010G141001 Sobic003G329600--Sobic001G539600 Sobic003G329600--Sobic004G222400 Sobic003G329600--Sobic010G089900 Sobic003G329600--Sobic008G099000 Sobic003G329600--Sobic002G273200 Sobic003G329600--Sobic001G466100 Sobic010G141001--Sobic004G222400 Sobic010G141001--Sobic003G255400 Sobic010G141001--Sobic003G329600 Sobic010G141001--Sobic001G539600 Sobic010G141001--Sobic008G099000 Sobic010G141001--Sobic010G176400 Sobic010G141001--Sobic002G273200 Sobic010G141001--Sobic010G089900 Sobic009G091000 Sobic009G091000 Sobic010G141001--Sobic009G091000 Sobic003G255400--Sobic001G539600 Sobic003G255400--Sobic010G141001 Sobic003G255400--Sobic003G329600 Sobic003G255400--Sobic010G176400 Sobic003G255400--Sobic004G222400 Sobic003G255400--Sobic010G089900 Sobic003G255400--Sobic002G273200 Sobic003G255400--Sobic008G099000 Sobic001G539940 Sobic001G539940 Sobic003G255400--Sobic001G539940 Sobic004G222400--Sobic010G141001 Sobic004G222400--Sobic008G099000 Sobic004G222400--Sobic003G329600 Sobic004G222400--Sobic010G176400 Sobic004G222400--Sobic003G255400 Sobic004G222400--Sobic001G539600 Sobic004G222400--Sobic009G091000 Sobic007G221932 Sobic007G221932 Sobic004G222400--Sobic007G221932 Sobic001G351600 Sobic001G351600 Sobic004G222400--Sobic001G351600 Sobic001G539600--Sobic003G255400 Sobic001G539600--Sobic003G329600 Sobic001G539600--Sobic010G141001 Sobic001G539600--Sobic010G176400 Sobic001G539600--Sobic010G089900 Sobic001G539600--Sobic002G273200 Sobic001G539600--Sobic004G222400 Sobic001G539600--Sobic001G539940 Sobic001G539600--Sobic008G099000 Sobic008G099000--Sobic004G222400 Sobic008G099000--Sobic010G141001 Sobic008G099000--Sobic003G329600 Sobic008G099000--Sobic010G176400 Sobic008G099000--Sobic003G255400 Sobic008G099000--Sobic001G539600 Sobic008G099000--Sobic009G091000 Sobic008G099000--Sobic007G221932 Sobic009G252000 Sobic009G252000 Sobic008G099000--Sobic009G252000 Sobic010G089900--Sobic003G329600 Sobic010G089900--Sobic001G539600 Sobic010G089900--Sobic010G176400 Sobic010G089900--Sobic003G255400 Sobic010G089900--Sobic001G539940 Sobic002G224000 Sobic002G224000 Sobic010G089900--Sobic002G224000 Sobic010G151575 Sobic010G151575 Sobic010G089900--Sobic010G151575 Sobic006G105500 Sobic006G105500 Sobic010G089900--Sobic006G105500 Sobic010G089900--Sobic002G273200 Sobic001G466100--Sobic009G252000 Sobic001G466100--Sobic009G091000 Sobic010G034300 Sobic010G034300 Sobic001G466100--Sobic010G034300 Sobic004G041800 Sobic004G041800 Sobic001G466100--Sobic004G041800 Sobic010G254100 Sobic010G254100 Sobic001G466100--Sobic010G254100 Sobic008G097800 Sobic008G097800 Sobic001G466100--Sobic008G097800 Sobic001G466100--Sobic007G221932 Sobic001G036200 Sobic001G036200 Sobic001G466100--Sobic001G036200 Sobic001G466100--Sobic010G176400 Sobic002G273200--Sobic001G539600 Sobic002G273200--Sobic003G255400 Sobic002G273200--Sobic001G539940 Sobic002G273200--Sobic010G089900 Sobic002G273200--Sobic003G329600 Sobic002G273200--Sobic010G141001 Sobic002G273200--Sobic002G224000 Sobic002G273200--Sobic010G176400 Sobic004G197200 Sobic004G197200 Sobic002G273200--Sobic004G197200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.