Gene annotation
Transcriptome id Sobic.010G141001.1
Synonym -
Functional annotation -
UniProt A0A1W0VT09
Pfam PF16898
Panther DB PTHR10169 PTHR10169:SF38
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G23890 : topoisomerase II
RAP-DB (Rice) LOC_Os02g47150.1 : DNA topoisomerase 2, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G222400 DEF7 - Defensin and Defensin-like DEFL family, expressed -
2 Sobic.003G255400 glyoxal oxidase-related, putative, expressed -
3 Sobic.003G329600 CAMK_CAMK_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
4 Sobic.001G539600 expansin precursor, putative, expressed -
5 Sobic.008G099000 protein of unknown function domain containing protein, expressed -
6 Sobic.010G176400 pectate lyase precursor, putative, expressed K01728: pectate lyase
7 Sobic.002G273200 kinesin motor domain containing protein, expressed K11498: centromeric protein E
8 Sobic.010G089900 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
9 Sobic.009G091000 TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
10 Sobic.007G221932 - -
11 Sobic.001G351600 hydrolase protein, putative, expressed -
12 Sobic.001G539940 - -
13 Sobic.008G085050 - -
14 Sobic.009G252000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
15 Sobic.001G466100 glycosyl hydrolase family 10 protein, putative, expressed -
16 Sobic.008G011901 - K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
17 Sobic.008G172000 expressed protein -
18 Sobic.007G080100 DNA binding protein, putative, expressed -
19 Sobic.002G323000 TBC domain containing protein, expressed -
20 Sobic.008G097800 CAMK_CAMK_like.47 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase


Gene co-expression network
sample Sobic010G141001 Sobic010G141001 Sobic004G222400 Sobic004G222400 Sobic010G141001--Sobic004G222400 Sobic003G255400 Sobic003G255400 Sobic010G141001--Sobic003G255400 Sobic003G329600 Sobic003G329600 Sobic010G141001--Sobic003G329600 Sobic001G539600 Sobic001G539600 Sobic010G141001--Sobic001G539600 Sobic008G099000 Sobic008G099000 Sobic010G141001--Sobic008G099000 Sobic010G176400 Sobic010G176400 Sobic010G141001--Sobic010G176400 Sobic002G273200 Sobic002G273200 Sobic010G141001--Sobic002G273200 Sobic010G089900 Sobic010G089900 Sobic010G141001--Sobic010G089900 Sobic009G091000 Sobic009G091000 Sobic010G141001--Sobic009G091000 Sobic004G222400--Sobic010G141001 Sobic004G222400--Sobic008G099000 Sobic004G222400--Sobic003G329600 Sobic004G222400--Sobic010G176400 Sobic004G222400--Sobic003G255400 Sobic004G222400--Sobic001G539600 Sobic004G222400--Sobic009G091000 Sobic007G221932 Sobic007G221932 Sobic004G222400--Sobic007G221932 Sobic001G351600 Sobic001G351600 Sobic004G222400--Sobic001G351600 Sobic003G255400--Sobic001G539600 Sobic003G255400--Sobic010G141001 Sobic003G255400--Sobic003G329600 Sobic003G255400--Sobic010G176400 Sobic003G255400--Sobic004G222400 Sobic003G255400--Sobic010G089900 Sobic003G255400--Sobic002G273200 Sobic003G255400--Sobic008G099000 Sobic001G539940 Sobic001G539940 Sobic003G255400--Sobic001G539940 Sobic003G329600--Sobic010G176400 Sobic003G329600--Sobic003G255400 Sobic003G329600--Sobic010G141001 Sobic003G329600--Sobic001G539600 Sobic003G329600--Sobic004G222400 Sobic003G329600--Sobic010G089900 Sobic003G329600--Sobic008G099000 Sobic003G329600--Sobic002G273200 Sobic001G466100 Sobic001G466100 Sobic003G329600--Sobic001G466100 Sobic001G539600--Sobic003G255400 Sobic001G539600--Sobic003G329600 Sobic001G539600--Sobic010G141001 Sobic001G539600--Sobic010G176400 Sobic001G539600--Sobic010G089900 Sobic001G539600--Sobic002G273200 Sobic001G539600--Sobic004G222400 Sobic001G539600--Sobic001G539940 Sobic001G539600--Sobic008G099000 Sobic008G099000--Sobic004G222400 Sobic008G099000--Sobic010G141001 Sobic008G099000--Sobic003G329600 Sobic008G099000--Sobic010G176400 Sobic008G099000--Sobic003G255400 Sobic008G099000--Sobic001G539600 Sobic008G099000--Sobic009G091000 Sobic008G099000--Sobic007G221932 Sobic009G252000 Sobic009G252000 Sobic008G099000--Sobic009G252000 Sobic010G176400--Sobic003G329600 Sobic010G176400--Sobic010G141001 Sobic010G176400--Sobic003G255400 Sobic010G176400--Sobic004G222400 Sobic010G176400--Sobic001G539600 Sobic010G176400--Sobic008G099000 Sobic010G176400--Sobic010G089900 Sobic010G176400--Sobic001G466100 Sobic010G176400--Sobic002G273200 Sobic002G273200--Sobic001G539600 Sobic002G273200--Sobic003G255400 Sobic002G273200--Sobic001G539940 Sobic002G273200--Sobic010G089900 Sobic002G273200--Sobic003G329600 Sobic002G273200--Sobic010G141001 Sobic002G224000 Sobic002G224000 Sobic002G273200--Sobic002G224000 Sobic002G273200--Sobic010G176400 Sobic004G197200 Sobic004G197200 Sobic002G273200--Sobic004G197200 Sobic010G089900--Sobic003G329600 Sobic010G089900--Sobic001G539600 Sobic010G089900--Sobic010G176400 Sobic010G089900--Sobic003G255400 Sobic010G089900--Sobic001G539940 Sobic010G089900--Sobic002G224000 Sobic010G151575 Sobic010G151575 Sobic010G089900--Sobic010G151575 Sobic006G105500 Sobic006G105500 Sobic010G089900--Sobic006G105500 Sobic010G089900--Sobic002G273200 Sobic009G091000--Sobic009G252000 Sobic009G091000--Sobic007G221932 Sobic008G097800 Sobic008G097800 Sobic009G091000--Sobic008G097800 Sobic010G034300 Sobic010G034300 Sobic009G091000--Sobic010G034300 Sobic010G254100 Sobic010G254100 Sobic009G091000--Sobic010G254100 Sobic004G336401 Sobic004G336401 Sobic009G091000--Sobic004G336401 Sobic009G091000--Sobic001G466100 Sobic009G091000--Sobic001G351600 Sobic005G035200 Sobic005G035200 Sobic009G091000--Sobic005G035200
Octagon: transcription factors


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