Gene annotation
Transcriptome id Sobic.001G539600.1
Synonym EXPB2, Sb01g050180, ATHEXPBETA1.4, ATEXPB2
Functional annotation expansin precursor, putative, expressed
UniProt A0A1Z5SCF1
Pfam PF03330 PF01357
Panther DB PTHR31692 PTHR31692:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65680 : expansin B2
RAP-DB (Rice) LOC_Os03g01610.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a021677 , Zm00025a021679 , Zm00025a021678 , Zm00025a024285 , Zm00025a024287 , Zm00025a021682 , Zm00025a021683 , Zm00025a021680 , Zm00025a021681
Brachypodium KQK07389 , KQJ85579
Barley HORVU0Hr1G005490.2 , HORVU0Hr1G005490.1
Wheat TraesCS1D02G215500 , TraesCS2D02G459300 , TraesCS2B02G480700 , TraesCS2A02G458900
Populus -


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cDNA sequences
Sobic.001G539600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G255400 glyoxal oxidase-related, putative, expressed -
2 Sobic.003G329600 CAMK_CAMK_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
3 Sobic.010G141001 - -
4 Sobic.010G176400 pectate lyase precursor, putative, expressed K01728: pectate lyase
5 Sobic.010G089900 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
6 Sobic.002G273200 kinesin motor domain containing protein, expressed K11498: centromeric protein E
7 Sobic.004G222400 DEF7 - Defensin and Defensin-like DEFL family, expressed -
8 Sobic.001G539940 - -
9 Sobic.008G099000 protein of unknown function domain containing protein, expressed -
10 Sobic.002G224000 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
11 Sobic.002G007900 - -
12 Sobic.004G197200 fimbrin-like protein 2, putative, expressed -
13 Sobic.010G151575 - -
14 Sobic.006G105500 pectinesterase, putative, expressed -
15 Sobic.008G085050 - -
16 Sobic.008G172000 expressed protein -
17 Sobic.004G359900 expressed protein -
18 Sobic.001G466100 glycosyl hydrolase family 10 protein, putative, expressed -
19 Sobic.009G091000 TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
20 Sobic.004G334900 vesicle-associated membrane protein, putative, expressed K08515: vesicle-associated membrane protein 7


Gene co-expression network
sample Sobic001G539600 Sobic001G539600 Sobic003G255400 Sobic003G255400 Sobic001G539600--Sobic003G255400 Sobic003G329600 Sobic003G329600 Sobic001G539600--Sobic003G329600 Sobic010G141001 Sobic010G141001 Sobic001G539600--Sobic010G141001 Sobic010G176400 Sobic010G176400 Sobic001G539600--Sobic010G176400 Sobic010G089900 Sobic010G089900 Sobic001G539600--Sobic010G089900 Sobic002G273200 Sobic002G273200 Sobic001G539600--Sobic002G273200 Sobic004G222400 Sobic004G222400 Sobic001G539600--Sobic004G222400 Sobic001G539940 Sobic001G539940 Sobic001G539600--Sobic001G539940 Sobic008G099000 Sobic008G099000 Sobic001G539600--Sobic008G099000 Sobic003G255400--Sobic001G539600 Sobic003G255400--Sobic010G141001 Sobic003G255400--Sobic003G329600 Sobic003G255400--Sobic010G176400 Sobic003G255400--Sobic004G222400 Sobic003G255400--Sobic010G089900 Sobic003G255400--Sobic002G273200 Sobic003G255400--Sobic008G099000 Sobic003G255400--Sobic001G539940 Sobic003G329600--Sobic010G176400 Sobic003G329600--Sobic003G255400 Sobic003G329600--Sobic010G141001 Sobic003G329600--Sobic001G539600 Sobic003G329600--Sobic004G222400 Sobic003G329600--Sobic010G089900 Sobic003G329600--Sobic008G099000 Sobic003G329600--Sobic002G273200 Sobic001G466100 Sobic001G466100 Sobic003G329600--Sobic001G466100 Sobic010G141001--Sobic004G222400 Sobic010G141001--Sobic003G255400 Sobic010G141001--Sobic003G329600 Sobic010G141001--Sobic001G539600 Sobic010G141001--Sobic008G099000 Sobic010G141001--Sobic010G176400 Sobic010G141001--Sobic002G273200 Sobic010G141001--Sobic010G089900 Sobic009G091000 Sobic009G091000 Sobic010G141001--Sobic009G091000 Sobic010G176400--Sobic003G329600 Sobic010G176400--Sobic010G141001 Sobic010G176400--Sobic003G255400 Sobic010G176400--Sobic004G222400 Sobic010G176400--Sobic001G539600 Sobic010G176400--Sobic008G099000 Sobic010G176400--Sobic010G089900 Sobic010G176400--Sobic001G466100 Sobic010G176400--Sobic002G273200 Sobic010G089900--Sobic003G329600 Sobic010G089900--Sobic001G539600 Sobic010G089900--Sobic010G176400 Sobic010G089900--Sobic003G255400 Sobic010G089900--Sobic001G539940 Sobic002G224000 Sobic002G224000 Sobic010G089900--Sobic002G224000 Sobic010G151575 Sobic010G151575 Sobic010G089900--Sobic010G151575 Sobic006G105500 Sobic006G105500 Sobic010G089900--Sobic006G105500 Sobic010G089900--Sobic002G273200 Sobic002G273200--Sobic001G539600 Sobic002G273200--Sobic003G255400 Sobic002G273200--Sobic001G539940 Sobic002G273200--Sobic010G089900 Sobic002G273200--Sobic003G329600 Sobic002G273200--Sobic010G141001 Sobic002G273200--Sobic002G224000 Sobic002G273200--Sobic010G176400 Sobic004G197200 Sobic004G197200 Sobic002G273200--Sobic004G197200 Sobic004G222400--Sobic010G141001 Sobic004G222400--Sobic008G099000 Sobic004G222400--Sobic003G329600 Sobic004G222400--Sobic010G176400 Sobic004G222400--Sobic003G255400 Sobic004G222400--Sobic001G539600 Sobic004G222400--Sobic009G091000 Sobic007G221932 Sobic007G221932 Sobic004G222400--Sobic007G221932 Sobic001G351600 Sobic001G351600 Sobic004G222400--Sobic001G351600 Sobic002G007900 Sobic002G007900 Sobic001G539940--Sobic002G007900 Sobic001G539940--Sobic002G224000 Sobic001G539940--Sobic004G197200 Sobic001G539940--Sobic010G151575 Sobic001G539940--Sobic010G089900 Sobic001G539940--Sobic001G539600 Sobic001G539940--Sobic002G273200 Sobic001G539940--Sobic003G255400 Sobic001G539940--Sobic006G105500 Sobic008G099000--Sobic004G222400 Sobic008G099000--Sobic010G141001 Sobic008G099000--Sobic003G329600 Sobic008G099000--Sobic010G176400 Sobic008G099000--Sobic003G255400 Sobic008G099000--Sobic001G539600 Sobic008G099000--Sobic009G091000 Sobic008G099000--Sobic007G221932 Sobic009G252000 Sobic009G252000 Sobic008G099000--Sobic009G252000
Octagon: transcription factors


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