Gene annotation
Transcriptome id Sobic.002G323000.1
Synonym Sb02g035060
Functional annotation TBC domain containing protein, expressed
UniProt C5XA49
Pfam PF00566
Panther DB PTHR22957 PTHR22957:SF272
NCBI CDD KOG2197; Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27100 : Ypt/Rab-GAP domain of gyp1p superfamily protein
RAP-DB (Rice) LOC_Os07g34130.1 : TBC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009172 , Zm00025a048250 , Zm00025a014821
Brachypodium KQJ81962 , KQJ81963 , PNT60762 , PNT69409 , KQJ81964
Barley HORVU2Hr1G045440.5 , HORVU2Hr1G045440.4 , HORVU2Hr1G045440.2 , HORVU2Hr1G045440.1 , HORVU5Hr1G124670.11 , HORVU5Hr1G124670.10 , HORVU5Hr1G124670.13 , HORVU5Hr1G124670.12 , HORVU5Hr1G124670.15 , HORVU5Hr1G124670.14 , HORVU5Hr1G124670.17 , HORVU5Hr1G124670.16 , HORVU5Hr1G124670.18 , HORVU5Hr1G124670.5 , HORVU5Hr1G124670.4 , HORVU5Hr1G124670.7 , HORVU5Hr1G124670.6 , HORVU5Hr1G124670.1 , HORVU5Hr1G124670.3 , HORVU5Hr1G124670.2 , HORVU5Hr1G124670.9 , HORVU5Hr1G124670.8
Wheat TraesCS7B02G000100 , TraesCS7B02G000100 , TraesCS2A02G219400 , TraesCS5D02G564100 , TraesCS5D02G564100 , TraesCS5D02G564100 , TraesCS5B02G572700 , TraesCS5B02G572700 , TraesCS2D02G225300 , TraesCS2D02G225300 , TraesCS2B02G245000
Populus -


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cDNA sequences
Sobic.002G323000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G024800 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
2 Sobic.008G011901 - K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
3 Sobic.007G080100 DNA binding protein, putative, expressed -
4 Sobic.007G221932 - -
5 Sobic.005G035200 - -
6 Sobic.001G539880 - -
7 Sobic.009G091000 TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
8 Sobic.008G097800 CAMK_CAMK_like.47 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
9 Sobic.002G145400 octicosapeptide/Phox/Bem1p, putative, expressed -
10 Sobic.003G195400 - -
11 Sobic.009G252000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
12 Sobic.005G035250 - -
13 Sobic.001G351600 hydrolase protein, putative, expressed -
14 Sobic.004G222400 DEF7 - Defensin and Defensin-like DEFL family, expressed -
15 Sobic.007G148233 - -
16 Sobic.008G099000 protein of unknown function domain containing protein, expressed -
17 Sobic.004G336401 - -
18 Sobic.010G254100 protein kinase APK1B, chloroplast precursor, putative, expressed -
19 Sobic.010G034300 pectate lyase precursor, putative, expressed K01728: pectate lyase
20 Sobic.002G225800 paramyosin, putative, expressed -


Gene co-expression network
sample Sobic002G323000 Sobic002G323000 Sobic004G024800 Sobic004G024800 Sobic002G323000--Sobic004G024800 Sobic008G011901 Sobic008G011901 Sobic002G323000--Sobic008G011901 Sobic007G080100 Sobic007G080100 Sobic002G323000--Sobic007G080100 Sobic007G221932 Sobic007G221932 Sobic002G323000--Sobic007G221932 Sobic005G035200 Sobic005G035200 Sobic002G323000--Sobic005G035200 Sobic001G539880 Sobic001G539880 Sobic002G323000--Sobic001G539880 Sobic009G091000 Sobic009G091000 Sobic002G323000--Sobic009G091000 Sobic008G097800 Sobic008G097800 Sobic002G323000--Sobic008G097800 Sobic002G145400 Sobic002G145400 Sobic002G323000--Sobic002G145400 Sobic004G024800--Sobic001G539880 Sobic004G024800--Sobic005G035200 Sobic004G024800--Sobic007G080100 Sobic003G195400 Sobic003G195400 Sobic004G024800--Sobic003G195400 Sobic007G148233 Sobic007G148233 Sobic004G024800--Sobic007G148233 Sobic004G024800--Sobic008G011901 Sobic004G024800--Sobic002G145400 Sobic004G024800--Sobic007G221932 Sobic005G035250 Sobic005G035250 Sobic004G024800--Sobic005G035250 Sobic008G011901--Sobic007G080100 Sobic008G011901--Sobic004G024800 Sobic008G011901--Sobic005G035200 Sobic008G011901--Sobic007G221932 Sobic008G011901--Sobic002G145400 Sobic008G011901--Sobic001G539880 Sobic008G011901--Sobic008G097800 Sobic008G011901--Sobic003G195400 Sobic008G011901--Sobic009G091000 Sobic007G080100--Sobic008G011901 Sobic007G080100--Sobic004G024800 Sobic007G080100--Sobic005G035200 Sobic007G080100--Sobic007G221932 Sobic007G080100--Sobic001G539880 Sobic007G080100--Sobic002G145400 Sobic007G080100--Sobic003G195400 Sobic007G080100--Sobic005G035250 Sobic007G080100--Sobic008G097800 Sobic007G221932--Sobic009G091000 Sobic007G221932--Sobic008G097800 Sobic009G252000 Sobic009G252000 Sobic007G221932--Sobic009G252000 Sobic007G221932--Sobic005G035200 Sobic007G221932--Sobic002G145400 Sobic004G336401 Sobic004G336401 Sobic007G221932--Sobic004G336401 Sobic010G254100 Sobic010G254100 Sobic007G221932--Sobic010G254100 Sobic010G034300 Sobic010G034300 Sobic007G221932--Sobic010G034300 Sobic007G221932--Sobic007G080100 Sobic005G035200--Sobic004G024800 Sobic005G035200--Sobic002G145400 Sobic005G035200--Sobic004G336401 Sobic005G035200--Sobic007G221932 Sobic005G035200--Sobic001G539880 Sobic005G035200--Sobic008G097800 Sobic005G035200--Sobic003G195400 Sobic005G035200--Sobic007G080100 Sobic005G035200--Sobic007G148233 Sobic001G539880--Sobic007G148233 Sobic001G539880--Sobic003G195400 Sobic001G539880--Sobic004G024800 Sobic002G225800 Sobic002G225800 Sobic001G539880--Sobic002G225800 Sobic001G539880--Sobic005G035250 Sobic001G539880--Sobic005G035200 Sobic001G539880--Sobic007G080100 Sobic002G128700 Sobic002G128700 Sobic001G539880--Sobic002G128700 Sobic001G539880--Sobic002G145400 Sobic009G091000--Sobic009G252000 Sobic009G091000--Sobic007G221932 Sobic009G091000--Sobic008G097800 Sobic009G091000--Sobic010G034300 Sobic009G091000--Sobic010G254100 Sobic009G091000--Sobic004G336401 Sobic001G466100 Sobic001G466100 Sobic009G091000--Sobic001G466100 Sobic001G351600 Sobic001G351600 Sobic009G091000--Sobic001G351600 Sobic009G091000--Sobic005G035200 Sobic008G097800--Sobic007G221932 Sobic008G097800--Sobic004G336401 Sobic008G097800--Sobic009G091000 Sobic008G097800--Sobic009G252000 Sobic008G097800--Sobic010G254100 Sobic008G097800--Sobic010G034300 Sobic008G097800--Sobic005G035200 Sobic008G097800--Sobic002G145400 Sobic008G097800--Sobic004G024800 Sobic002G145400--Sobic005G035200 Sobic002G145400--Sobic008G097800 Sobic002G145400--Sobic004G336401 Sobic002G145400--Sobic007G221932 Sobic002G145400--Sobic004G024800 Sobic002G145400--Sobic010G254100 Sobic002G145400--Sobic007G080100 Sobic002G145400--Sobic009G091000 Sobic002G145400--Sobic003G195400
Octagon: transcription factors


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