Gene annotation
Transcriptome id Sobic.003G254200.1
Synonym Sb03g030940, ROPGEF12, ATROPGEF12, MEE64
Functional annotation ATROPGEF7/ROPGEF7, putative, expressed
UniProt A0A1B6Q5A8
Pfam PF03759
Panther DB PTHR33101 PTHR33101:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005089; Rho guanyl-nucleotide exchange factor activity


Orthologs (automatic annotation)
TAIR AT1G79860 : RHO guanyl-nucleotide exchange factor 12
RAP-DB (Rice) LOC_Os01g48410.1 : ATROPGEF7/ROPGEF7, putative, expressed
MaizeGDB (Corn) Zm00025a028071 , Zm00025a019827 , Zm00025a039980
Brachypodium KQK09839 , PNT72892 , PNT72893
Barley HORVU3Hr1G073200.10 , HORVU3Hr1G073200.1 , HORVU3Hr1G073200.3 , HORVU3Hr1G073200.2 , HORVU3Hr1G073200.5 , HORVU3Hr1G073200.4 , HORVU3Hr1G073200.7 , HORVU3Hr1G073200.6 , HORVU3Hr1G073200.9 , HORVU3Hr1G073200.8
Wheat TraesCS3A02G305500 , TraesCS3A02G305500 , TraesCS3A02G270400 , TraesCS3D02G296400 , TraesCS3A02G270400 , TraesCS3B02G304200 , TraesCS3D02G270200 , TraesCS3B02G331000
Populus -


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cDNA sequences
Sobic.003G254200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G074000 expressed protein -
2 Sobic.009G249400 protein kinase family protein, putative, expressed -
3 Sobic.004G048900 myosin heavy chain, putative, expressed -
4 Sobic.007G185801 - -
5 Sobic.008G052800 - -
6 Sobic.003G208900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed -
7 Sobic.006G232700 BTBN12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
8 Sobic.010G187800 expressed protein -
9 Sobic.010G030500 - -
10 Sobic.004G185000 STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed -
11 Sobic.004G060400 ANTH/ENTH domain containing protein, putative, expressed -
12 Sobic.005G147900 - -
13 Sobic.001G196400 transmembrane and coiled-coil domain-containing protein 4, putative, expressed -
14 Sobic.004G031900 phosphatidylinositol transfer, putative, expressed -
15 Sobic.009G176200 expressed protein -
16 Sobic.002G405300 START domain containing protein, expressed -
17 Sobic.005G039000 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
18 Sobic.003G317000 BTBN12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
19 Sobic.005G192000 receptor kinase, putative, expressed -
20 Sobic.004G042800 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic003G254200 Sobic003G254200 Sobic010G074000 Sobic010G074000 Sobic003G254200--Sobic010G074000 Sobic009G249400 Sobic009G249400 Sobic003G254200--Sobic009G249400 Sobic004G048900 Sobic004G048900 Sobic003G254200--Sobic004G048900 Sobic007G185801 Sobic007G185801 Sobic003G254200--Sobic007G185801 Sobic008G052800 Sobic008G052800 Sobic003G254200--Sobic008G052800 Sobic003G208900 Sobic003G208900 Sobic003G254200--Sobic003G208900 Sobic006G232700 Sobic006G232700 Sobic003G254200--Sobic006G232700 Sobic010G187800 Sobic010G187800 Sobic003G254200--Sobic010G187800 Sobic010G030500 Sobic010G030500 Sobic003G254200--Sobic010G030500 Sobic010G074000--Sobic003G254200 Sobic010G074000--Sobic009G249400 Sobic010G074000--Sobic007G185801 Sobic010G074000--Sobic003G208900 Sobic010G074000--Sobic006G232700 Sobic010G074000--Sobic010G187800 Sobic005G147900 Sobic005G147900 Sobic010G074000--Sobic005G147900 Sobic010G074000--Sobic008G052800 Sobic010G074000--Sobic010G030500 Sobic009G249400--Sobic003G208900 Sobic005G039000 Sobic005G039000 Sobic009G249400--Sobic005G039000 Sobic009G249400--Sobic007G185801 Sobic009G249400--Sobic010G187800 Sobic009G249400--Sobic003G254200 Sobic009G249400--Sobic008G052800 Sobic009G249400--Sobic010G074000 Sobic003G305500 Sobic003G305500 Sobic009G249400--Sobic003G305500 Sobic002G405300 Sobic002G405300 Sobic009G249400--Sobic002G405300 Sobic004G048900--Sobic009G249400 Sobic004G048900--Sobic003G254200 Sobic004G048900--Sobic010G074000 Sobic004G031900 Sobic004G031900 Sobic004G048900--Sobic004G031900 Sobic009G176200 Sobic009G176200 Sobic004G048900--Sobic009G176200 Sobic009G072600 Sobic009G072600 Sobic004G048900--Sobic009G072600 Sobic004G048900--Sobic003G208900 Sobic010G157900 Sobic010G157900 Sobic004G048900--Sobic010G157900 Sobic005G192000 Sobic005G192000 Sobic004G048900--Sobic005G192000 Sobic003G343000 Sobic003G343000 Sobic007G185801--Sobic003G343000 Sobic007G185801--Sobic003G208900 Sobic007G185801--Sobic003G305500 Sobic007G139300 Sobic007G139300 Sobic007G185801--Sobic007G139300 Sobic007G185801--Sobic005G039000 Sobic006G176200 Sobic006G176200 Sobic007G185801--Sobic006G176200 Sobic006G059100 Sobic006G059100 Sobic007G185801--Sobic006G059100 Sobic009G259600 Sobic009G259600 Sobic007G185801--Sobic009G259600 Sobic001G473700 Sobic001G473700 Sobic007G185801--Sobic001G473700 Sobic001G500900 Sobic001G500900 Sobic008G052800--Sobic001G500900 Sobic010G166600 Sobic010G166600 Sobic008G052800--Sobic010G166600 Sobic002G304300 Sobic002G304300 Sobic008G052800--Sobic002G304300 Sobic005G065300 Sobic005G065300 Sobic008G052800--Sobic005G065300 Sobic009G089200 Sobic009G089200 Sobic008G052800--Sobic009G089200 Sobic009G227500 Sobic009G227500 Sobic008G052800--Sobic009G227500 Sobic001G045400 Sobic001G045400 Sobic008G052800--Sobic001G045400 Sobic008G052800--Sobic002G405300 Sobic003G405800 Sobic003G405800 Sobic008G052800--Sobic003G405800 Sobic003G208900--Sobic003G305500 Sobic003G208900--Sobic005G039000 Sobic003G343300 Sobic003G343300 Sobic003G208900--Sobic003G343300 Sobic003G208900--Sobic003G343000 Sobic007G195000 Sobic007G195000 Sobic003G208900--Sobic007G195000 Sobic003G208900--Sobic007G185801 Sobic004G042800 Sobic004G042800 Sobic003G208900--Sobic004G042800 Sobic003G208900--Sobic007G139300 Sobic006G062100 Sobic006G062100 Sobic003G208900--Sobic006G062100 Sobic001G196400 Sobic001G196400 Sobic006G232700--Sobic001G196400 Sobic003G317000 Sobic003G317000 Sobic006G232700--Sobic003G317000 Sobic006G232700--Sobic010G030500 Sobic006G232700--Sobic003G208900 Sobic006G232700--Sobic004G042800 Sobic006G232700--Sobic003G305500 Sobic001G435300 Sobic001G435300 Sobic006G232700--Sobic001G435300 Sobic006G232700--Sobic010G074000 Sobic002G298201 Sobic002G298201 Sobic006G232700--Sobic002G298201 Sobic004G185000 Sobic004G185000 Sobic010G187800--Sobic004G185000 Sobic001G513400 Sobic001G513400 Sobic010G187800--Sobic001G513400 Sobic001G380000 Sobic001G380000 Sobic010G187800--Sobic001G380000 Sobic010G187800--Sobic002G405300 Sobic010G187800--Sobic009G176200 Sobic004G123100 Sobic004G123100 Sobic010G187800--Sobic004G123100 Sobic003G233800 Sobic003G233800 Sobic010G187800--Sobic003G233800 Sobic010G187800--Sobic009G249400 Sobic001G036200 Sobic001G036200 Sobic010G187800--Sobic001G036200 Sobic010G030500--Sobic006G232700 Sobic010G030500--Sobic003G208900 Sobic010G030500--Sobic005G039000 Sobic010G030500--Sobic001G196400 Sobic010G030500--Sobic003G305500 Sobic010G030500--Sobic003G317000 Sobic001G155100 Sobic001G155100 Sobic010G030500--Sobic001G155100 Sobic004G168150 Sobic004G168150 Sobic010G030500--Sobic004G168150 Sobic010G030500--Sobic007G185801
Octagon: transcription factors


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