Gene annotation
Transcriptome id Sobic.006G232700.1,Sobic.006G232700.2
Synonym Sb06g030040
Functional annotation BTBN12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
UniProt C5YGR8 , A0A1Z5RF89
Pfam PF00651 PF03000
Panther DB PTHR32370 PTHR32370:SF28
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G03250 : Phototropic-responsive NPH3 family protein
RAP-DB (Rice) LOC_Os04g54400.1 : BTBN12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
MaizeGDB (Corn) Zm00025a008065 , Zm00025a009620 , Zm00025a027282 , Zm00025a020770
Brachypodium KQK13013 , PNT76347 , KQK10073 , KQK19264 , PNT61555 , PNT61947 , KQK13304 , PNT61948 , PNT61949
Barley HORVU6Hr1G015480.2 , HORVU6Hr1G015480.3 , HORVU6Hr1G015480.1 , HORVU5Hr1G093880.2 , HORVU5Hr1G093880.1 , HORVU5Hr1G093850.4 , HORVU5Hr1G093850.5 , HORVU5Hr1G093850.6 , HORVU5Hr1G093850.7 , HORVU5Hr1G093850.1 , HORVU5Hr1G093850.2 , HORVU5Hr1G093850.3 , HORVU5Hr1G093850.8 , HORVU5Hr1G093850.9 , HORVU3Hr1G076740.2 , HORVU3Hr1G076740.1 , HORVU5Hr1G093850.16 , HORVU5Hr1G093850.14 , HORVU5Hr1G093850.15 , HORVU5Hr1G093850.12 , HORVU5Hr1G093850.13 , HORVU5Hr1G093850.10 , HORVU5Hr1G093850.11 , HORVU5Hr1G093850.19
Wheat TraesCS5A02G403400 , TraesCS1B02G298700 , TraesCS2B02G557300 , TraesCS2B02G557300 , TraesCS5D02G389200 , TraesCS5D02G389200 , TraesCS2A02G526900 , TraesCS6B02G117400 , TraesCS5B02G383100 , TraesCS3A02G317300 , TraesCSU02G114000 , TraesCS6A02G085100 , TraesCS2D02G529600 , TraesCS5D02G413400 , TraesCS2D02G507400 , TraesCS3D02G314000 , TraesCS3B02G349200 , TraesCS5B02G408200
Populus -


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cDNA sequences
Sobic.006G232700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G196400 transmembrane and coiled-coil domain-containing protein 4, putative, expressed -
2 Sobic.003G317000 BTBN12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
3 Sobic.010G030500 - -
4 Sobic.003G208900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed -
5 Sobic.004G042800 protein kinase domain containing protein, expressed -
6 Sobic.003G305500 expressed protein -
7 Sobic.001G435300 C2 domain containing protein, expressed -
8 Sobic.010G074000 expressed protein -
9 Sobic.002G298201 - K11593: ELF2C, eukaryotic translation initiation factor 2C
10 Sobic.007G112832 - -
11 Sobic.007G185801 - -
12 Sobic.005G039000 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
13 Sobic.002G261400 Os9bglu31 - beta-glucosidase, dhurrinase, similar to G. max hydroxyisourate hydrolase, expressed K01188: beta-glucosidase
14 Sobic.001G386900 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
15 Sobic.007G161100 ENTH domain containing protein, expressed -
16 Sobic.010G026200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
17 Sobic.005G147900 - -
18 Sobic.003G254200 ATROPGEF7/ROPGEF7, putative, expressed -
19 Sobic.004G168150 - -
20 Sobic.004G327000 STE_PAK_Ste20_STLK.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39


Gene co-expression network
sample Sobic006G232700 Sobic006G232700 Sobic001G196400 Sobic001G196400 Sobic006G232700--Sobic001G196400 Sobic003G317000 Sobic003G317000 Sobic006G232700--Sobic003G317000 Sobic010G030500 Sobic010G030500 Sobic006G232700--Sobic010G030500 Sobic003G208900 Sobic003G208900 Sobic006G232700--Sobic003G208900 Sobic004G042800 Sobic004G042800 Sobic006G232700--Sobic004G042800 Sobic003G305500 Sobic003G305500 Sobic006G232700--Sobic003G305500 Sobic001G435300 Sobic001G435300 Sobic006G232700--Sobic001G435300 Sobic010G074000 Sobic010G074000 Sobic006G232700--Sobic010G074000 Sobic002G298201 Sobic002G298201 Sobic006G232700--Sobic002G298201 Sobic001G196400--Sobic003G317000 Sobic001G196400--Sobic006G232700 Sobic007G161100 Sobic007G161100 Sobic001G196400--Sobic007G161100 Sobic001G196400--Sobic003G208900 Sobic004G327000 Sobic004G327000 Sobic001G196400--Sobic004G327000 Sobic001G196400--Sobic004G042800 Sobic001G196400--Sobic003G305500 Sobic010G026200 Sobic010G026200 Sobic001G196400--Sobic010G026200 Sobic005G039000 Sobic005G039000 Sobic001G196400--Sobic005G039000 Sobic003G317000--Sobic001G196400 Sobic003G317000--Sobic003G305500 Sobic009G062600 Sobic009G062600 Sobic003G317000--Sobic009G062600 Sobic003G317000--Sobic003G208900 Sobic001G002400 Sobic001G002400 Sobic003G317000--Sobic001G002400 Sobic003G343000 Sobic003G343000 Sobic003G317000--Sobic003G343000 Sobic006G164800 Sobic006G164800 Sobic003G317000--Sobic006G164800 Sobic003G317000--Sobic006G232700 Sobic003G317000--Sobic004G042800 Sobic010G030500--Sobic006G232700 Sobic010G030500--Sobic003G208900 Sobic010G030500--Sobic005G039000 Sobic010G030500--Sobic001G196400 Sobic010G030500--Sobic003G305500 Sobic010G030500--Sobic003G317000 Sobic001G155100 Sobic001G155100 Sobic010G030500--Sobic001G155100 Sobic004G168150 Sobic004G168150 Sobic010G030500--Sobic004G168150 Sobic007G185801 Sobic007G185801 Sobic010G030500--Sobic007G185801 Sobic003G208900--Sobic003G305500 Sobic003G208900--Sobic005G039000 Sobic003G343300 Sobic003G343300 Sobic003G208900--Sobic003G343300 Sobic003G208900--Sobic003G343000 Sobic007G195000 Sobic007G195000 Sobic003G208900--Sobic007G195000 Sobic003G208900--Sobic007G185801 Sobic003G208900--Sobic004G042800 Sobic007G139300 Sobic007G139300 Sobic003G208900--Sobic007G139300 Sobic006G062100 Sobic006G062100 Sobic003G208900--Sobic006G062100 Sobic004G042800--Sobic003G208900 Sobic004G042800--Sobic003G305500 Sobic004G042800--Sobic001G435300 Sobic001G188100 Sobic001G188100 Sobic004G042800--Sobic001G188100 Sobic002G049700 Sobic002G049700 Sobic004G042800--Sobic002G049700 Sobic004G042800--Sobic003G343000 Sobic004G160000 Sobic004G160000 Sobic004G042800--Sobic004G160000 Sobic001G392650 Sobic001G392650 Sobic004G042800--Sobic001G392650 Sobic004G042800--Sobic007G139300 Sobic003G305500--Sobic003G343000 Sobic003G305500--Sobic003G208900 Sobic003G305500--Sobic003G343300 Sobic006G059100 Sobic006G059100 Sobic003G305500--Sobic006G059100 Sobic008G134600 Sobic008G134600 Sobic003G305500--Sobic008G134600 Sobic003G305500--Sobic009G062600 Sobic008G124301 Sobic008G124301 Sobic003G305500--Sobic008G124301 Sobic003G445600 Sobic003G445600 Sobic003G305500--Sobic003G445600 Sobic003G305500--Sobic006G062100 Sobic008G169101 Sobic008G169101 Sobic001G435300--Sobic008G169101 Sobic002G402900 Sobic002G402900 Sobic001G435300--Sobic002G402900 Sobic005G058600 Sobic005G058600 Sobic001G435300--Sobic005G058600 Sobic001G435300--Sobic004G042800 Sobic001G435300--Sobic001G392650 Sobic009G110700 Sobic009G110700 Sobic001G435300--Sobic009G110700 Sobic001G435300--Sobic002G049700 Sobic001G366700 Sobic001G366700 Sobic001G435300--Sobic001G366700 Sobic005G191300 Sobic005G191300 Sobic001G435300--Sobic005G191300 Sobic003G254200 Sobic003G254200 Sobic010G074000--Sobic003G254200 Sobic009G249400 Sobic009G249400 Sobic010G074000--Sobic009G249400 Sobic010G074000--Sobic007G185801 Sobic010G074000--Sobic003G208900 Sobic010G074000--Sobic006G232700 Sobic010G187800 Sobic010G187800 Sobic010G074000--Sobic010G187800 Sobic005G147900 Sobic005G147900 Sobic010G074000--Sobic005G147900 Sobic008G052800 Sobic008G052800 Sobic010G074000--Sobic008G052800 Sobic010G074000--Sobic010G030500 Sobic002G298201--Sobic003G317000 Sobic005G049900 Sobic005G049900 Sobic002G298201--Sobic005G049900 Sobic002G298201--Sobic001G196400 Sobic002G298201--Sobic006G232700 Sobic001G136150 Sobic001G136150 Sobic002G298201--Sobic001G136150 Sobic002G034200 Sobic002G034200 Sobic002G298201--Sobic002G034200 Sobic002G298201--Sobic005G147900 Sobic002G298201--Sobic007G161100 Sobic002G298201--Sobic003G305500
Octagon: transcription factors


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