Gene annotation
Transcriptome id Sobic.002G298201.1
Synonym -
Functional annotation -
UniProt A0A1W0W6B9
Pfam PF08699 PF16487 PF16488 PF00161 PF02170 PF12899
Panther DB PTHR22891 PTHR22891:SF39
NCBI CDD -
KEGG Orthology K11593; ELF2C, eukaryotic translation initiation factor 2C
Gene Ontology GO:0017148; negative regulation of translation GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G43810 : Stabilizer of iron transporter SufD / Polynucleotidyl transferase
RAP-DB (Rice) LOC_Os07g28850.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a007235 , Zm00025a018799
Brachypodium PNT65781
Barley HORVU6Hr1G014540.1 , HORVU6Hr1G014540.2
Wheat TraesCS6A02G084100 , TraesCS6D02G077600 , TraesCS6B02G112900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G317000 BTBN12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
2 Sobic.005G049900 - -
3 Sobic.001G196400 transmembrane and coiled-coil domain-containing protein 4, putative, expressed -
4 Sobic.006G232700 BTBN12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
5 Sobic.001G136150 - K11593: ELF2C, eukaryotic translation initiation factor 2C
6 Sobic.002G034200 - -
7 Sobic.005G147900 - -
8 Sobic.007G161100 ENTH domain containing protein, expressed -
9 Sobic.003G305500 expressed protein -
10 Sobic.009G062600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase D, putative, expressed K01115: phospholipase D1/2
11 Sobic.009G103650 - -
12 Sobic.003G343000 DEFL4 - Defensin and Defensin-like DEFL family, expressed -
13 Sobic.007G185801 - -
14 Sobic.006G016800 OsSigP3 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed -
15 Sobic.004G327000 STE_PAK_Ste20_STLK.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
16 Sobic.010G026200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
17 Sobic.002G261400 Os9bglu31 - beta-glucosidase, dhurrinase, similar to G. max hydroxyisourate hydrolase, expressed K01188: beta-glucosidase
18 Sobic.003G208900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed -
19 Sobic.001G002400 OsSub55 - Putative Subtilisin homologue, expressed -
20 Sobic.004G042800 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic002G298201 Sobic002G298201 Sobic003G317000 Sobic003G317000 Sobic002G298201--Sobic003G317000 Sobic005G049900 Sobic005G049900 Sobic002G298201--Sobic005G049900 Sobic001G196400 Sobic001G196400 Sobic002G298201--Sobic001G196400 Sobic006G232700 Sobic006G232700 Sobic002G298201--Sobic006G232700 Sobic001G136150 Sobic001G136150 Sobic002G298201--Sobic001G136150 Sobic002G034200 Sobic002G034200 Sobic002G298201--Sobic002G034200 Sobic005G147900 Sobic005G147900 Sobic002G298201--Sobic005G147900 Sobic007G161100 Sobic007G161100 Sobic002G298201--Sobic007G161100 Sobic003G305500 Sobic003G305500 Sobic002G298201--Sobic003G305500 Sobic003G317000--Sobic001G196400 Sobic003G317000--Sobic003G305500 Sobic009G062600 Sobic009G062600 Sobic003G317000--Sobic009G062600 Sobic003G208900 Sobic003G208900 Sobic003G317000--Sobic003G208900 Sobic001G002400 Sobic001G002400 Sobic003G317000--Sobic001G002400 Sobic003G343000 Sobic003G343000 Sobic003G317000--Sobic003G343000 Sobic006G164800 Sobic006G164800 Sobic003G317000--Sobic006G164800 Sobic003G317000--Sobic006G232700 Sobic004G042800 Sobic004G042800 Sobic003G317000--Sobic004G042800 Sobic005G049900--Sobic002G298201 Sobic005G049900--Sobic005G147900 Sobic005G049900--Sobic002G034200 Sobic005G049900--Sobic003G317000 Sobic005G049900--Sobic001G136150 Sobic005G049900--Sobic001G196400 Sobic006G238500 Sobic006G238500 Sobic005G049900--Sobic006G238500 Sobic002G261400 Sobic002G261400 Sobic005G049900--Sobic002G261400 Sobic006G016800 Sobic006G016800 Sobic005G049900--Sobic006G016800 Sobic001G196400--Sobic003G317000 Sobic001G196400--Sobic006G232700 Sobic001G196400--Sobic007G161100 Sobic001G196400--Sobic003G208900 Sobic004G327000 Sobic004G327000 Sobic001G196400--Sobic004G327000 Sobic001G196400--Sobic004G042800 Sobic001G196400--Sobic003G305500 Sobic010G026200 Sobic010G026200 Sobic001G196400--Sobic010G026200 Sobic005G039000 Sobic005G039000 Sobic001G196400--Sobic005G039000 Sobic006G232700--Sobic001G196400 Sobic006G232700--Sobic003G317000 Sobic010G030500 Sobic010G030500 Sobic006G232700--Sobic010G030500 Sobic006G232700--Sobic003G208900 Sobic006G232700--Sobic004G042800 Sobic006G232700--Sobic003G305500 Sobic001G435300 Sobic001G435300 Sobic006G232700--Sobic001G435300 Sobic010G074000 Sobic010G074000 Sobic006G232700--Sobic010G074000 Sobic006G232700--Sobic002G298201 Sobic001G136150--Sobic002G034200 Sobic001G136150--Sobic006G238500 Sobic001G136150--Sobic006G016800 Sobic005G204600 Sobic005G204600 Sobic001G136150--Sobic005G204600 Sobic004G062300 Sobic004G062300 Sobic001G136150--Sobic004G062300 Sobic001G136150--Sobic006G164800 Sobic001G197050 Sobic001G197050 Sobic001G136150--Sobic001G197050 Sobic007G081701 Sobic007G081701 Sobic001G136150--Sobic007G081701 Sobic009G086600 Sobic009G086600 Sobic001G136150--Sobic009G086600 Sobic002G034200--Sobic004G062300 Sobic002G034200--Sobic001G136150 Sobic002G034200--Sobic006G238500 Sobic002G034200--Sobic006G164800 Sobic002G034200--Sobic001G002400 Sobic003G445600 Sobic003G445600 Sobic002G034200--Sobic003G445600 Sobic002G034200--Sobic009G062600 Sobic002G034200--Sobic005G204600 Sobic004G217200 Sobic004G217200 Sobic002G034200--Sobic004G217200 Sobic005G147900--Sobic002G261400 Sobic005G147900--Sobic006G016800 Sobic007G185801 Sobic007G185801 Sobic005G147900--Sobic007G185801 Sobic005G147900--Sobic002G034200 Sobic005G147900--Sobic005G049900 Sobic005G147900--Sobic001G136150 Sobic005G147900--Sobic003G343000 Sobic005G147900--Sobic010G030500 Sobic005G147900--Sobic003G317000 Sobic007G161100--Sobic004G327000 Sobic004G059200 Sobic004G059200 Sobic007G161100--Sobic004G059200 Sobic006G018701 Sobic006G018701 Sobic007G161100--Sobic006G018701 Sobic007G161100--Sobic010G026200 Sobic007G161100--Sobic005G039000 Sobic007G161100--Sobic001G196400 Sobic004G160000 Sobic004G160000 Sobic007G161100--Sobic004G160000 Sobic007G161100--Sobic003G208900 Sobic002G406801 Sobic002G406801 Sobic007G161100--Sobic002G406801 Sobic003G305500--Sobic003G343000 Sobic003G305500--Sobic003G208900 Sobic003G343300 Sobic003G343300 Sobic003G305500--Sobic003G343300 Sobic006G059100 Sobic006G059100 Sobic003G305500--Sobic006G059100 Sobic008G134600 Sobic008G134600 Sobic003G305500--Sobic008G134600 Sobic003G305500--Sobic009G062600 Sobic008G124301 Sobic008G124301 Sobic003G305500--Sobic008G124301 Sobic003G305500--Sobic003G445600 Sobic006G062100 Sobic006G062100 Sobic003G305500--Sobic006G062100
Octagon: transcription factors


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