Gene annotation
Transcriptome id Sobic.001G136150.1
Synonym -
Functional annotation -
UniProt A0A1Z5S5K8
Pfam PF16487 PF16488 PF08699 PF02170 PF02171
Panther DB PTHR22891 PTHR22891:SF49
NCBI CDD -
KEGG Orthology K11593; ELF2C, eukaryotic translation initiation factor 2C
Gene Ontology GO:0005515; protein binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G48410 : Stabilizer of iron transporter SufD / Polynucleotidyl transferase
RAP-DB (Rice) LOC_Os03g47820.1 : PINHEAD, putative, expressed
MaizeGDB (Corn) Zm00025a017111 , Zm00025a042256 , Zm00025a051228
Brachypodium KQK13776
Barley HORVU4Hr1G004030.7 , HORVU4Hr1G004030.6 , HORVU4Hr1G004030.5 , HORVU4Hr1G004030.3 , HORVU4Hr1G004030.2 , HORVU4Hr1G004030.1
Wheat TraesCS4B02G024000 , TraesCS4D02G024100 , TraesCS4A02G288000 , TraesCS4D02G024300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G034200 - -
2 Sobic.006G238500 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
3 Sobic.006G016800 OsSigP3 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed -
4 Sobic.005G204600 OsMADS68 - MADS-box family gene with MIKC , type-box, expressed -
5 Sobic.004G062300 fasciclin-like arabinogalactan precursor protein, putative, expressed -
6 Sobic.006G164800 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
7 Sobic.001G197050 - -
8 Sobic.007G081701 - K10523: speckle-type POZ protein
9 Sobic.009G086600 expressed protein -
10 Sobic.003G320000 expressed protein -
11 Sobic.010G098932 - -
12 Sobic.008G176500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@AGC_AGC_other_GWLd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
13 Sobic.001G002400 OsSub55 - Putative Subtilisin homologue, expressed -
14 Sobic.007G145500 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein
15 Sobic.010G145000 - -
16 Sobic.003G250160 - -
17 Sobic.003G164400 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
18 Sobic.002G000200 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
19 Sobic.003G445600 KIP1, putative, expressed -
20 Sobic.001G041600 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2


Gene co-expression network
sample Sobic001G136150 Sobic001G136150 Sobic002G034200 Sobic002G034200 Sobic001G136150--Sobic002G034200 Sobic006G238500 Sobic006G238500 Sobic001G136150--Sobic006G238500 Sobic006G016800 Sobic006G016800 Sobic001G136150--Sobic006G016800 Sobic005G204600 Sobic005G204600 Sobic001G136150--Sobic005G204600 Sobic004G062300 Sobic004G062300 Sobic001G136150--Sobic004G062300 Sobic006G164800 Sobic006G164800 Sobic001G136150--Sobic006G164800 Sobic001G197050 Sobic001G197050 Sobic001G136150--Sobic001G197050 Sobic007G081701 Sobic007G081701 Sobic001G136150--Sobic007G081701 Sobic009G086600 Sobic009G086600 Sobic001G136150--Sobic009G086600 Sobic002G034200--Sobic004G062300 Sobic002G034200--Sobic001G136150 Sobic002G034200--Sobic006G238500 Sobic002G034200--Sobic006G164800 Sobic001G002400 Sobic001G002400 Sobic002G034200--Sobic001G002400 Sobic003G445600 Sobic003G445600 Sobic002G034200--Sobic003G445600 Sobic009G062600 Sobic009G062600 Sobic002G034200--Sobic009G062600 Sobic002G034200--Sobic005G204600 Sobic004G217200 Sobic004G217200 Sobic002G034200--Sobic004G217200 Sobic007G145500 Sobic007G145500 Sobic006G238500--Sobic007G145500 Sobic001G063300 Sobic001G063300 Sobic006G238500--Sobic001G063300 Sobic001G261416 Sobic001G261416 Sobic006G238500--Sobic001G261416 Sobic010G216100 Sobic010G216100 Sobic006G238500--Sobic010G216100 Sobic007G014000 Sobic007G014000 Sobic006G238500--Sobic007G014000 Sobic010G090200 Sobic010G090200 Sobic006G238500--Sobic010G090200 Sobic010G207800 Sobic010G207800 Sobic006G238500--Sobic010G207800 Sobic010G240300 Sobic010G240300 Sobic006G238500--Sobic010G240300 Sobic008G086500 Sobic008G086500 Sobic006G238500--Sobic008G086500 Sobic005G147900 Sobic005G147900 Sobic006G016800--Sobic005G147900 Sobic006G016800--Sobic001G136150 Sobic002G261400 Sobic002G261400 Sobic006G016800--Sobic002G261400 Sobic006G016800--Sobic002G034200 Sobic007G185801 Sobic007G185801 Sobic006G016800--Sobic007G185801 Sobic006G016800--Sobic006G238500 Sobic003G313200 Sobic003G313200 Sobic006G016800--Sobic003G313200 Sobic001G366700 Sobic001G366700 Sobic006G016800--Sobic001G366700 Sobic003G343000 Sobic003G343000 Sobic006G016800--Sobic003G343000 Sobic008G043300 Sobic008G043300 Sobic005G204600--Sobic008G043300 Sobic001G092500 Sobic001G092500 Sobic005G204600--Sobic001G092500 Sobic001G287400 Sobic001G287400 Sobic005G204600--Sobic001G287400 Sobic005G204600--Sobic007G145500 Sobic008G053750 Sobic008G053750 Sobic005G204600--Sobic008G053750 Sobic005G040700 Sobic005G040700 Sobic005G204600--Sobic005G040700 Sobic007G131000 Sobic007G131000 Sobic005G204600--Sobic007G131000 Sobic001G171300 Sobic001G171300 Sobic005G204600--Sobic001G171300 Sobic001G130500 Sobic001G130500 Sobic005G204600--Sobic001G130500 Sobic004G062300--Sobic006G164800 Sobic007G167000 Sobic007G167000 Sobic004G062300--Sobic007G167000 Sobic007G001800 Sobic007G001800 Sobic004G062300--Sobic007G001800 Sobic001G269600 Sobic001G269600 Sobic004G062300--Sobic001G269600 Sobic004G062300--Sobic004G217200 Sobic001G269700 Sobic001G269700 Sobic004G062300--Sobic001G269700 Sobic001G269200 Sobic001G269200 Sobic004G062300--Sobic001G269200 Sobic002G414300 Sobic002G414300 Sobic004G062300--Sobic002G414300 Sobic010G107800 Sobic010G107800 Sobic004G062300--Sobic010G107800 Sobic006G164800--Sobic004G062300 Sobic006G164800--Sobic007G001800 Sobic006G164800--Sobic004G217200 Sobic004G293300 Sobic004G293300 Sobic006G164800--Sobic004G293300 Sobic001G409000 Sobic001G409000 Sobic006G164800--Sobic001G409000 Sobic003G394801 Sobic003G394801 Sobic006G164800--Sobic003G394801 Sobic006G164800--Sobic007G167000 Sobic003G175600 Sobic003G175600 Sobic006G164800--Sobic003G175600 Sobic002G053800 Sobic002G053800 Sobic006G164800--Sobic002G053800 Sobic001G197050--Sobic007G081701 Sobic003G250160 Sobic003G250160 Sobic001G197050--Sobic003G250160 Sobic009G177750 Sobic009G177750 Sobic001G197050--Sobic009G177750 Sobic003G320000 Sobic003G320000 Sobic001G197050--Sobic003G320000 Sobic004G255900 Sobic004G255900 Sobic001G197050--Sobic004G255900 Sobic001G197050--Sobic005G204600 Sobic002G011300 Sobic002G011300 Sobic001G197050--Sobic002G011300 Sobic001G197050--Sobic008G053750 Sobic005G112500 Sobic005G112500 Sobic001G197050--Sobic005G112500 Sobic007G081701--Sobic003G250160 Sobic007G081701--Sobic009G177750 Sobic006G276801 Sobic006G276801 Sobic007G081701--Sobic006G276801 Sobic007G081701--Sobic001G197050 Sobic007G081701--Sobic005G112500 Sobic001G467400 Sobic001G467400 Sobic007G081701--Sobic001G467400 Sobic004G258000 Sobic004G258000 Sobic007G081701--Sobic004G258000 Sobic007G081701--Sobic004G255900 Sobic007G081701--Sobic002G011300 Sobic010G145000 Sobic010G145000 Sobic009G086600--Sobic010G145000 Sobic010G034400 Sobic010G034400 Sobic009G086600--Sobic010G034400 Sobic002G150932 Sobic002G150932 Sobic009G086600--Sobic002G150932 Sobic001G094700 Sobic001G094700 Sobic009G086600--Sobic001G094700
Octagon: transcription factors


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