Gene annotation
Transcriptome id Sobic.006G238500.1
Synonym Sb06g030520
Functional annotation coatomer subunit epsilon, putative, expressed
UniProt A0A1Z5RFB0
Pfam PF04733
Panther DB PTHR10805 PTHR10805:SF1
NCBI CDD KOG3081; Vesicle coat complex COPI, epsilon subunit
KEGG Orthology K17268; coatomer subunit epsilon
Gene Ontology GO:0006890; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum GO:0005198structural molecule activity


Orthologs (automatic annotation)
TAIR AT1G30630 : Coatomer epsilon subunit
RAP-DB (Rice) LOC_Os04g55200.1 : coatomer subunit epsilon, putative, expressed
MaizeGDB (Corn) Zm00025a057192
Brachypodium KQJ84927
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G145500 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein
2 Sobic.001G063300 CAMK_CAMK_like.23 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
3 Sobic.001G261416 - K01858: INO1, myo-inositol-1-phosphate synthase
4 Sobic.010G216100 leaf senescence related protein, putative, expressed -
5 Sobic.007G014000 OsFBX142 - F-box domain containing protein, expressed -
6 Sobic.010G090200 OsMADS63 - MADS-box family gene with MIKC , type-box, expressed -
7 Sobic.010G207800 E1-E2 ATPase domain containing protein, expressed K01535: PMA1, H+-transporting ATPase
8 Sobic.010G240300 Os12bglu38 - beta-glucosidase/beta-mannosidase/exoglucanase homologue, expressed K05350: beta-glucosidase
9 Sobic.008G086500 - -
10 Sobic.005G006100 hypothetical protein -
11 Sobic.005G006400 DEFL55 - Defensin and Defensin-like DEFL family, expressed -
12 Sobic.001G171300 UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
13 Sobic.010G215000 fasciclin-like arabinogalactan precursor protein, putative, expressed -
14 Sobic.007G215200 "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
15 Sobic.002G194300 expressed protein -
16 Sobic.001G165700 B3 DNA binding domain containing protein, expressed -
17 Sobic.007G035200 - -
18 Sobic.001G287400 VQ domain containing protein, putative, expressed -
19 Sobic.005G204600 OsMADS68 - MADS-box family gene with MIKC , type-box, expressed -
20 Sobic.007G122600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G238500 Sobic006G238500 Sobic007G145500 Sobic007G145500 Sobic006G238500--Sobic007G145500 Sobic001G063300 Sobic001G063300 Sobic006G238500--Sobic001G063300 Sobic001G261416 Sobic001G261416 Sobic006G238500--Sobic001G261416 Sobic010G216100 Sobic010G216100 Sobic006G238500--Sobic010G216100 Sobic007G014000 Sobic007G014000 Sobic006G238500--Sobic007G014000 Sobic010G090200 Sobic010G090200 Sobic006G238500--Sobic010G090200 Sobic010G207800 Sobic010G207800 Sobic006G238500--Sobic010G207800 Sobic010G240300 Sobic010G240300 Sobic006G238500--Sobic010G240300 Sobic008G086500 Sobic008G086500 Sobic006G238500--Sobic008G086500 Sobic001G165700 Sobic001G165700 Sobic007G145500--Sobic001G165700 Sobic001G171300 Sobic001G171300 Sobic007G145500--Sobic001G171300 Sobic001G287400 Sobic001G287400 Sobic007G145500--Sobic001G287400 Sobic007G145500--Sobic001G261416 Sobic010G215000 Sobic010G215000 Sobic007G145500--Sobic010G215000 Sobic001G329200 Sobic001G329200 Sobic007G145500--Sobic001G329200 Sobic003G175950 Sobic003G175950 Sobic007G145500--Sobic003G175950 Sobic001G130500 Sobic001G130500 Sobic007G145500--Sobic001G130500 Sobic006G005300 Sobic006G005300 Sobic007G145500--Sobic006G005300 Sobic001G063300--Sobic001G261416 Sobic001G063300--Sobic010G090200 Sobic001G063300--Sobic010G207800 Sobic001G063300--Sobic010G216100 Sobic001G063300--Sobic007G014000 Sobic001G063300--Sobic010G240300 Sobic007G215200 Sobic007G215200 Sobic001G063300--Sobic007G215200 Sobic001G063300--Sobic001G287400 Sobic005G006100 Sobic005G006100 Sobic001G063300--Sobic005G006100 Sobic001G261416--Sobic010G090200 Sobic001G261416--Sobic001G171300 Sobic001G261416--Sobic001G287400 Sobic001G261416--Sobic001G329200 Sobic001G261416--Sobic007G014000 Sobic001G261416--Sobic001G165700 Sobic001G261416--Sobic010G216100 Sobic001G261416--Sobic010G207800 Sobic001G261416--Sobic010G215000 Sobic010G216100--Sobic007G014000 Sobic010G216100--Sobic010G240300 Sobic010G216100--Sobic010G090200 Sobic010G216100--Sobic001G261416 Sobic010G216100--Sobic008G086500 Sobic005G006400 Sobic005G006400 Sobic010G216100--Sobic005G006400 Sobic002G194300 Sobic002G194300 Sobic010G216100--Sobic002G194300 Sobic010G216100--Sobic010G215000 Sobic010G216100--Sobic010G207800 Sobic007G014000--Sobic010G090200 Sobic007G014000--Sobic010G240300 Sobic007G014000--Sobic010G216100 Sobic007G014000--Sobic001G261416 Sobic007G014000--Sobic010G207800 Sobic007G014000--Sobic005G006400 Sobic007G014000--Sobic008G086500 Sobic007G035200 Sobic007G035200 Sobic007G014000--Sobic007G035200 Sobic007G014000--Sobic005G006100 Sobic010G090200--Sobic001G261416 Sobic010G090200--Sobic007G014000 Sobic010G090200--Sobic010G240300 Sobic010G090200--Sobic010G216100 Sobic010G090200--Sobic001G171300 Sobic010G090200--Sobic010G207800 Sobic010G090200--Sobic010G215000 Sobic010G090200--Sobic001G287400 Sobic010G090200--Sobic005G006400 Sobic010G207800--Sobic007G014000 Sobic010G207800--Sobic007G215200 Sobic010G207800--Sobic001G261416 Sobic010G207800--Sobic010G090200 Sobic010G207800--Sobic010G216100 Sobic010G207800--Sobic005G006100 Sobic010G207800--Sobic010G240300 Sobic001G167300 Sobic001G167300 Sobic010G207800--Sobic001G167300 Sobic010G207800--Sobic001G287400 Sobic010G240300--Sobic005G006400 Sobic010G240300--Sobic007G014000 Sobic010G240300--Sobic008G086500 Sobic010G240300--Sobic010G216100 Sobic010G240300--Sobic007G035200 Sobic010G240300--Sobic010G090200 Sobic003G007650 Sobic003G007650 Sobic010G240300--Sobic003G007650 Sobic010G240300--Sobic005G006100 Sobic002G194201 Sobic002G194201 Sobic010G240300--Sobic002G194201 Sobic008G086500--Sobic005G006400 Sobic008G086500--Sobic010G240300 Sobic008G086500--Sobic007G035200 Sobic008G086500--Sobic003G007650 Sobic008G086500--Sobic002G194201 Sobic008G086500--Sobic010G216100 Sobic008G086500--Sobic007G014000 Sobic008G086500--Sobic002G194300 Sobic007G134501 Sobic007G134501 Sobic008G086500--Sobic007G134501
Octagon: transcription factors


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