Gene annotation
Transcriptome id Sobic.003G077600.1
Synonym DDB2, Sb03g006550
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XQ48
Pfam -
Panther DB PTHR15169 PTHR15169:SF0
NCBI CDD KOG4328; WD40 protein
KEGG Orthology K10140; DNA damage-binding protein 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58760 : damaged DNA binding 2
RAP-DB (Rice) LOC_Os01g04870.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035151 , Zm00025a035597
Brachypodium KQK02625
Barley -
Wheat TraesCS3D02G054200 , TraesCS3A02G054700 , TraesCS3B02G066200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G141100 OsFBO6 - F-box and other domain containing protein, expressed -
2 Sobic.010G056100 HIRAN domain containing protein, putative, expressed K15363: FAN1, fanconi-associated nuclease 1
3 Sobic.009G038600 GA20663-PA, putative, expressed -
4 Sobic.001G167800 single-stranded DNA-binding protein, putative, expressed -
5 Sobic.004G046001 - -
6 Sobic.008G140000 expressed protein -
7 Sobic.006G213200 expressed protein -
8 Sobic.002G139700 tubulin binding cofactor C, putative, expressed -
9 Sobic.007G129100 - -
10 Sobic.009G180100 LTPL61 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
11 Sobic.010G057400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
12 Sobic.010G063433 - -
13 Sobic.010G270300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@rhodanese-like domain containing protein, putative, expressed -
14 Sobic.004G345900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed -
15 Sobic.003G325200 disease resistance protein, putative, expressed -
16 Sobic.010G125700 HEAT repeat family protein, putative, expressed K06699: proteasome activator subunit 4
17 Sobic.006G109200 expressed protein -
18 Sobic.005G130100 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
19 Sobic.009G109450 - -
20 Sobic.010G060400 leucoanthocyanidin dioxygenase, putative, expressed -


Gene co-expression network
sample Sobic003G077600 Sobic003G077600 Sobic006G141100 Sobic006G141100 Sobic003G077600--Sobic006G141100 Sobic010G056100 Sobic010G056100 Sobic003G077600--Sobic010G056100 Sobic009G038600 Sobic009G038600 Sobic003G077600--Sobic009G038600 Sobic001G167800 Sobic001G167800 Sobic003G077600--Sobic001G167800 Sobic004G046001 Sobic004G046001 Sobic003G077600--Sobic004G046001 Sobic008G140000 Sobic008G140000 Sobic003G077600--Sobic008G140000 Sobic006G213200 Sobic006G213200 Sobic003G077600--Sobic006G213200 Sobic002G139700 Sobic002G139700 Sobic003G077600--Sobic002G139700 Sobic007G129100 Sobic007G129100 Sobic003G077600--Sobic007G129100 Sobic004G112800 Sobic004G112800 Sobic006G141100--Sobic004G112800 Sobic007G005200 Sobic007G005200 Sobic006G141100--Sobic007G005200 Sobic006G141100--Sobic002G139700 Sobic006G141100--Sobic010G056100 Sobic010G063433 Sobic010G063433 Sobic006G141100--Sobic010G063433 Sobic001G028600 Sobic001G028600 Sobic006G141100--Sobic001G028600 Sobic009G051500 Sobic009G051500 Sobic006G141100--Sobic009G051500 Sobic006G141100--Sobic006G213200 Sobic007G113101 Sobic007G113101 Sobic006G141100--Sobic007G113101 Sobic004G128100 Sobic004G128100 Sobic010G056100--Sobic004G128100 Sobic010G066200 Sobic010G066200 Sobic010G056100--Sobic010G066200 Sobic003G301400 Sobic003G301400 Sobic010G056100--Sobic003G301400 Sobic010G056100--Sobic006G141100 Sobic002G284600 Sobic002G284600 Sobic010G056100--Sobic002G284600 Sobic010G056100--Sobic010G063433 Sobic010G056100--Sobic003G077600 Sobic003G395600 Sobic003G395600 Sobic010G056100--Sobic003G395600 Sobic001G192900 Sobic001G192900 Sobic010G056100--Sobic001G192900 Sobic006G223200 Sobic006G223200 Sobic009G038600--Sobic006G223200 Sobic006G138600 Sobic006G138600 Sobic009G038600--Sobic006G138600 Sobic002G430400 Sobic002G430400 Sobic009G038600--Sobic002G430400 Sobic009G037000 Sobic009G037000 Sobic009G038600--Sobic009G037000 Sobic010G038600 Sobic010G038600 Sobic009G038600--Sobic010G038600 Sobic009G038600--Sobic003G077600 Sobic005G008500 Sobic005G008500 Sobic009G038600--Sobic005G008500 Sobic009G184800 Sobic009G184800 Sobic009G038600--Sobic009G184800 Sobic008G040000 Sobic008G040000 Sobic009G038600--Sobic008G040000 Sobic004G183300 Sobic004G183300 Sobic001G167800--Sobic004G183300 Sobic006G122500 Sobic006G122500 Sobic001G167800--Sobic006G122500 Sobic001G489900 Sobic001G489900 Sobic001G167800--Sobic001G489900 Sobic002G104400 Sobic002G104400 Sobic001G167800--Sobic002G104400 Sobic003G089600 Sobic003G089600 Sobic001G167800--Sobic003G089600 Sobic001G167800--Sobic003G077600 Sobic003G336200 Sobic003G336200 Sobic001G167800--Sobic003G336200 Sobic006G168500 Sobic006G168500 Sobic001G167800--Sobic006G168500 Sobic001G316100 Sobic001G316100 Sobic001G167800--Sobic001G316100 Sobic004G046001--Sobic008G140000 Sobic004G250100 Sobic004G250100 Sobic004G046001--Sobic004G250100 Sobic008G142766 Sobic008G142766 Sobic004G046001--Sobic008G142766 Sobic001G527600 Sobic001G527600 Sobic004G046001--Sobic001G527600 Sobic006G055100 Sobic006G055100 Sobic004G046001--Sobic006G055100 Sobic003G091850 Sobic003G091850 Sobic004G046001--Sobic003G091850 Sobic008G110900 Sobic008G110900 Sobic004G046001--Sobic008G110900 Sobic008G178300 Sobic008G178300 Sobic004G046001--Sobic008G178300 Sobic002G074300 Sobic002G074300 Sobic004G046001--Sobic002G074300 Sobic008G140000--Sobic004G046001 Sobic003G156766 Sobic003G156766 Sobic008G140000--Sobic003G156766 Sobic001G538800 Sobic001G538800 Sobic008G140000--Sobic001G538800 Sobic010G035801 Sobic010G035801 Sobic008G140000--Sobic010G035801 Sobic005G023301 Sobic005G023301 Sobic008G140000--Sobic005G023301 Sobic001G246200 Sobic001G246200 Sobic008G140000--Sobic001G246200 Sobic010G116700 Sobic010G116700 Sobic008G140000--Sobic010G116700 Sobic008G117900 Sobic008G117900 Sobic008G140000--Sobic008G117900 Sobic008G100300 Sobic008G100300 Sobic008G140000--Sobic008G100300 Sobic006G213200--Sobic006G141100 Sobic008G189000 Sobic008G189000 Sobic006G213200--Sobic008G189000 Sobic001G490700 Sobic001G490700 Sobic006G213200--Sobic001G490700 Sobic006G213200--Sobic007G005200 Sobic004G066100 Sobic004G066100 Sobic006G213200--Sobic004G066100 Sobic006G213200--Sobic002G430400 Sobic006G213200--Sobic004G046001 Sobic001G490800 Sobic001G490800 Sobic006G213200--Sobic001G490800 Sobic001G442800 Sobic001G442800 Sobic006G213200--Sobic001G442800 Sobic001G408500 Sobic001G408500 Sobic002G139700--Sobic001G408500 Sobic002G139700--Sobic006G141100 Sobic005G118900 Sobic005G118900 Sobic002G139700--Sobic005G118900 Sobic005G068300 Sobic005G068300 Sobic002G139700--Sobic005G068300 Sobic001G095800 Sobic001G095800 Sobic002G139700--Sobic001G095800 Sobic002G139700--Sobic009G051500 Sobic002G139700--Sobic007G005200 Sobic003G124000 Sobic003G124000 Sobic002G139700--Sobic003G124000 Sobic004G268600 Sobic004G268600 Sobic002G139700--Sobic004G268600 Sobic001G015300 Sobic001G015300 Sobic007G129100--Sobic001G015300 Sobic002G376900 Sobic002G376900 Sobic007G129100--Sobic002G376900 Sobic006G249000 Sobic006G249000 Sobic007G129100--Sobic006G249000 Sobic010G270300 Sobic010G270300 Sobic007G129100--Sobic010G270300 Sobic009G078500 Sobic009G078500 Sobic007G129100--Sobic009G078500 Sobic002G051300 Sobic002G051300 Sobic007G129100--Sobic002G051300 Sobic005G130100 Sobic005G130100 Sobic007G129100--Sobic005G130100 Sobic001G363100 Sobic001G363100 Sobic007G129100--Sobic001G363100 Sobic002G376800 Sobic002G376800 Sobic007G129100--Sobic002G376800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.