Gene annotation
Transcriptome id Sobic.006G141100.1,Sobic.006G141100.2
Synonym UBP12
Functional annotation OsFBO6 - F-box and other domain containing protein, expressed
UniProt A0A1Z5RDT9 , A0A1Z5REI8
Pfam PF12937 PF03478
Panther DB PTHR11102 PTHR11102:SF105
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G06600 : ubiquitin-specific protease 12
RAP-DB (Rice) LOC_Os11g36790.1 : OsFBO6 - F-box and other domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G112800 expressed protein -
2 Sobic.007G005200 PHD-finger domain containing protein, expressed -
3 Sobic.002G139700 tubulin binding cofactor C, putative, expressed -
4 Sobic.010G056100 HIRAN domain containing protein, putative, expressed K15363: FAN1, fanconi-associated nuclease 1
5 Sobic.010G063433 - -
6 Sobic.001G028600 expressed protein -
7 Sobic.009G051500 expressed protein -
8 Sobic.006G213200 expressed protein -
9 Sobic.007G113101 - -
10 Sobic.002G284600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSAUR39 - Auxin-responsive SAUR gene family member, expressed -
11 Sobic.003G350200 - -
12 Sobic.003G311250 - -
13 Sobic.003G077600 WD domain, G-beta repeat domain containing protein, expressed K10140: DNA damage-binding protein 2
14 Sobic.005G203400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NBS-LRR type disease resistance protein, putative, expressed -
15 Sobic.001G408500 alpha-taxilin, putative, expressed -
16 Sobic.002G051000 expressed protein K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
17 Sobic.008G182500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thaumatin, putative, expressed -
18 Sobic.002G416250 - -
19 Sobic.003G174601 - -
20 Sobic.003G124000 DNA methyltransferase protein, putative, expressed -


Gene co-expression network
sample Sobic006G141100 Sobic006G141100 Sobic004G112800 Sobic004G112800 Sobic006G141100--Sobic004G112800 Sobic007G005200 Sobic007G005200 Sobic006G141100--Sobic007G005200 Sobic002G139700 Sobic002G139700 Sobic006G141100--Sobic002G139700 Sobic010G056100 Sobic010G056100 Sobic006G141100--Sobic010G056100 Sobic010G063433 Sobic010G063433 Sobic006G141100--Sobic010G063433 Sobic001G028600 Sobic001G028600 Sobic006G141100--Sobic001G028600 Sobic009G051500 Sobic009G051500 Sobic006G141100--Sobic009G051500 Sobic006G213200 Sobic006G213200 Sobic006G141100--Sobic006G213200 Sobic007G113101 Sobic007G113101 Sobic006G141100--Sobic007G113101 Sobic004G112800--Sobic006G141100 Sobic001G060732 Sobic001G060732 Sobic004G112800--Sobic001G060732 Sobic004G112800--Sobic007G005200 Sobic004G230300 Sobic004G230300 Sobic004G112800--Sobic004G230300 Sobic004G116900 Sobic004G116900 Sobic004G112800--Sobic004G116900 Sobic001G490200 Sobic001G490200 Sobic004G112800--Sobic001G490200 Sobic004G013900 Sobic004G013900 Sobic004G112800--Sobic004G013900 Sobic001G408500 Sobic001G408500 Sobic004G112800--Sobic001G408500 Sobic003G156800 Sobic003G156800 Sobic004G112800--Sobic003G156800 Sobic007G005200--Sobic006G141100 Sobic007G005200--Sobic004G112800 Sobic007G005200--Sobic002G139700 Sobic007G005200--Sobic001G408500 Sobic007G005200--Sobic001G028600 Sobic007G005200--Sobic006G213200 Sobic007G005200--Sobic004G230300 Sobic009G241966 Sobic009G241966 Sobic007G005200--Sobic009G241966 Sobic007G099500 Sobic007G099500 Sobic007G005200--Sobic007G099500 Sobic002G139700--Sobic001G408500 Sobic002G139700--Sobic006G141100 Sobic005G118900 Sobic005G118900 Sobic002G139700--Sobic005G118900 Sobic005G068300 Sobic005G068300 Sobic002G139700--Sobic005G068300 Sobic001G095800 Sobic001G095800 Sobic002G139700--Sobic001G095800 Sobic002G139700--Sobic009G051500 Sobic002G139700--Sobic007G005200 Sobic003G124000 Sobic003G124000 Sobic002G139700--Sobic003G124000 Sobic004G268600 Sobic004G268600 Sobic002G139700--Sobic004G268600 Sobic004G128100 Sobic004G128100 Sobic010G056100--Sobic004G128100 Sobic010G066200 Sobic010G066200 Sobic010G056100--Sobic010G066200 Sobic003G301400 Sobic003G301400 Sobic010G056100--Sobic003G301400 Sobic010G056100--Sobic006G141100 Sobic002G284600 Sobic002G284600 Sobic010G056100--Sobic002G284600 Sobic010G056100--Sobic010G063433 Sobic003G077600 Sobic003G077600 Sobic010G056100--Sobic003G077600 Sobic003G395600 Sobic003G395600 Sobic010G056100--Sobic003G395600 Sobic001G192900 Sobic001G192900 Sobic010G056100--Sobic001G192900 Sobic010G063433--Sobic001G028600 Sobic001G128800 Sobic001G128800 Sobic010G063433--Sobic001G128800 Sobic010G104200 Sobic010G104200 Sobic010G063433--Sobic010G104200 Sobic006G055100 Sobic006G055100 Sobic010G063433--Sobic006G055100 Sobic002G007250 Sobic002G007250 Sobic010G063433--Sobic002G007250 Sobic003G311250 Sobic003G311250 Sobic010G063433--Sobic003G311250 Sobic008G061500 Sobic008G061500 Sobic010G063433--Sobic008G061500 Sobic001G287301 Sobic001G287301 Sobic010G063433--Sobic001G287301 Sobic008G042250 Sobic008G042250 Sobic010G063433--Sobic008G042250 Sobic001G028600--Sobic002G007250 Sobic004G212800 Sobic004G212800 Sobic001G028600--Sobic004G212800 Sobic002G108800 Sobic002G108800 Sobic001G028600--Sobic002G108800 Sobic002G285200 Sobic002G285200 Sobic001G028600--Sobic002G285200 Sobic001G345333 Sobic001G345333 Sobic001G028600--Sobic001G345333 Sobic007G156500 Sobic007G156500 Sobic001G028600--Sobic007G156500 Sobic010G248200 Sobic010G248200 Sobic001G028600--Sobic010G248200 Sobic002G253500 Sobic002G253500 Sobic001G028600--Sobic002G253500 Sobic008G161401 Sobic008G161401 Sobic001G028600--Sobic008G161401 Sobic009G051500--Sobic005G118900 Sobic009G051500--Sobic002G139700 Sobic009G051500--Sobic006G141100 Sobic006G102200 Sobic006G102200 Sobic009G051500--Sobic006G102200 Sobic003G350200 Sobic003G350200 Sobic009G051500--Sobic003G350200 Sobic004G107550 Sobic004G107550 Sobic009G051500--Sobic004G107550 Sobic003G172300 Sobic003G172300 Sobic009G051500--Sobic003G172300 Sobic009G051500--Sobic001G095800 Sobic006G183100 Sobic006G183100 Sobic009G051500--Sobic006G183100 Sobic006G213200--Sobic006G141100 Sobic008G189000 Sobic008G189000 Sobic006G213200--Sobic008G189000 Sobic001G490700 Sobic001G490700 Sobic006G213200--Sobic001G490700 Sobic006G213200--Sobic007G005200 Sobic004G066100 Sobic004G066100 Sobic006G213200--Sobic004G066100 Sobic002G430400 Sobic002G430400 Sobic006G213200--Sobic002G430400 Sobic004G046001 Sobic004G046001 Sobic006G213200--Sobic004G046001 Sobic001G490800 Sobic001G490800 Sobic006G213200--Sobic001G490800 Sobic001G442800 Sobic001G442800 Sobic006G213200--Sobic001G442800 Sobic007G085400 Sobic007G085400 Sobic007G113101--Sobic007G085400 Sobic003G169700 Sobic003G169700 Sobic007G113101--Sobic003G169700 Sobic001G093400 Sobic001G093400 Sobic007G113101--Sobic001G093400 Sobic001G423200 Sobic001G423200 Sobic007G113101--Sobic001G423200 Sobic001G420150 Sobic001G420150 Sobic007G113101--Sobic001G420150 Sobic004G332200 Sobic004G332200 Sobic007G113101--Sobic004G332200 Sobic003G163000 Sobic003G163000 Sobic007G113101--Sobic003G163000 Sobic002G337400 Sobic002G337400 Sobic007G113101--Sobic002G337400 Sobic004G276600 Sobic004G276600 Sobic007G113101--Sobic004G276600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.