Gene annotation
Transcriptome id Sobic.001G028600.1
Synonym Sb01g002700
Functional annotation expressed protein
UniProt C5WU35
Pfam -
Panther DB PTHR33872 PTHR33872:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os03g61160.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G007250 - -
2 Sobic.004G212800 - -
3 Sobic.002G108800 auxin efflux carrier component, putative, expressed -
4 Sobic.002G285200 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR53 - Auxin-responsive SAUR gene family member, expressed -
5 Sobic.001G345333 - -
6 Sobic.007G156500 alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
7 Sobic.010G248200 KID-containing protein, putative, expressed -
8 Sobic.002G253500 FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase
9 Sobic.008G161401 - -
10 Sobic.004G076732 - K14800: pre-rRNA-processing protein TSR2
11 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
12 Sobic.004G164600 - -
13 Sobic.008G009500 pentatricopeptide, putative, expressed -
14 Sobic.007G132600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
15 Sobic.003G357500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@laccase precursor protein, putative, expressed K05909: laccase
16 Sobic.002G410200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.008G031350 - -
18 Sobic.008G042250 - -
19 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
20 Sobic.001G243901 - -


Gene co-expression network
sample Sobic001G028600 Sobic001G028600 Sobic002G007250 Sobic002G007250 Sobic001G028600--Sobic002G007250 Sobic004G212800 Sobic004G212800 Sobic001G028600--Sobic004G212800 Sobic002G108800 Sobic002G108800 Sobic001G028600--Sobic002G108800 Sobic002G285200 Sobic002G285200 Sobic001G028600--Sobic002G285200 Sobic001G345333 Sobic001G345333 Sobic001G028600--Sobic001G345333 Sobic007G156500 Sobic007G156500 Sobic001G028600--Sobic007G156500 Sobic010G248200 Sobic010G248200 Sobic001G028600--Sobic010G248200 Sobic002G253500 Sobic002G253500 Sobic001G028600--Sobic002G253500 Sobic008G161401 Sobic008G161401 Sobic001G028600--Sobic008G161401 Sobic002G007250--Sobic001G345333 Sobic002G007250--Sobic010G248200 Sobic002G007250--Sobic002G108800 Sobic002G007250--Sobic004G212800 Sobic001G243901 Sobic001G243901 Sobic002G007250--Sobic001G243901 Sobic004G164600 Sobic004G164600 Sobic002G007250--Sobic004G164600 Sobic007G073400 Sobic007G073400 Sobic002G007250--Sobic007G073400 Sobic002G007250--Sobic002G253500 Sobic008G042250 Sobic008G042250 Sobic002G007250--Sobic008G042250 Sobic004G212800--Sobic007G073400 Sobic004G212800--Sobic004G164600 Sobic001G024200 Sobic001G024200 Sobic004G212800--Sobic001G024200 Sobic004G212800--Sobic001G345333 Sobic004G212800--Sobic002G007250 Sobic004G212800--Sobic010G248200 Sobic004G076732 Sobic004G076732 Sobic004G212800--Sobic004G076732 Sobic004G212800--Sobic008G161401 Sobic004G112500 Sobic004G112500 Sobic004G212800--Sobic004G112500 Sobic002G108800--Sobic007G156500 Sobic002G108800--Sobic002G007250 Sobic002G108800--Sobic001G345333 Sobic002G108800--Sobic002G253500 Sobic002G108800--Sobic010G248200 Sobic002G108800--Sobic004G212800 Sobic002G039500 Sobic002G039500 Sobic002G108800--Sobic002G039500 Sobic007G023700 Sobic007G023700 Sobic002G108800--Sobic007G023700 Sobic002G108800--Sobic007G073400 Sobic002G285200--Sobic004G076732 Sobic002G410200 Sobic002G410200 Sobic002G285200--Sobic002G410200 Sobic007G115000 Sobic007G115000 Sobic002G285200--Sobic007G115000 Sobic002G285200--Sobic004G212800 SobicK009900 SobicK009900 Sobic002G285200--SobicK009900 Sobic001G253100 Sobic001G253100 Sobic002G285200--Sobic001G253100 Sobic002G285200--Sobic004G164600 Sobic002G285200--Sobic007G073400 Sobic003G424100 Sobic003G424100 Sobic002G285200--Sobic003G424100 Sobic001G345333--Sobic002G007250 Sobic001G345333--Sobic002G108800 Sobic001G345333--Sobic001G243901 Sobic001G345333--Sobic004G212800 Sobic001G345333--Sobic010G248200 Sobic001G345333--Sobic004G164600 Sobic001G345333--Sobic007G073400 Sobic001G345333--Sobic002G253500 Sobic001G345333--Sobic008G042250 Sobic007G156500--Sobic002G108800 Sobic007G156500--Sobic002G253500 Sobic009G231300 Sobic009G231300 Sobic007G156500--Sobic009G231300 Sobic007G156500--Sobic002G007250 Sobic007G156500--Sobic010G248200 Sobic007G156500--Sobic002G039500 Sobic007G156500--Sobic001G345333 Sobic007G156500--Sobic007G023700 Sobic007G156500--Sobic008G161401 Sobic010G248200--Sobic002G007250 Sobic010G248200--Sobic001G345333 Sobic010G248200--Sobic004G212800 Sobic005G130200 Sobic005G130200 Sobic010G248200--Sobic005G130200 Sobic010G248200--Sobic002G253500 Sobic010G248200--Sobic008G161401 Sobic010G248200--Sobic002G108800 Sobic010G248200--Sobic001G243901 Sobic010G218500 Sobic010G218500 Sobic010G248200--Sobic010G218500 Sobic002G253500--Sobic010G248200 Sobic002G253500--Sobic002G108800 Sobic002G253500--Sobic007G156500 Sobic002G253500--Sobic002G039500 Sobic002G253500--Sobic001G345333 Sobic002G253500--Sobic002G007250 Sobic002G253500--Sobic004G212800 Sobic002G253500--Sobic010G218500 Sobic002G253500--Sobic008G161401 Sobic008G161401--Sobic010G248200 Sobic008G161401--Sobic004G212800 Sobic008G161401--Sobic007G073400 Sobic008G161401--Sobic005G130200 Sobic003G057800 Sobic003G057800 Sobic008G161401--Sobic003G057800 Sobic003G357500 Sobic003G357500 Sobic008G161401--Sobic003G357500 Sobic009G156000 Sobic009G156000 Sobic008G161401--Sobic009G156000 Sobic008G161401--Sobic002G108800 Sobic001G479500 Sobic001G479500 Sobic008G161401--Sobic001G479500
Octagon: transcription factors


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