Gene annotation
Transcriptome id Sobic.001G168000.3,Sobic.001G168000.7,Sobic.001G168000.2,Sobic.001G168000.1,Sobic.001G168000.6,Sobic.001G168000.4,Sobic.001G168000.5
Synonym Sb01g014690
Functional annotation OsFBD13 - F-box and FBD domain containing protein, expressed
UniProt A0A1Z5S609 , A0A1Z5S616 , A0A1Z5S607 , A0A1Z5S6C0 , A0A1Z5S620
Pfam PF08387
Panther DB PTHR32212 PTHR32212:SF61
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G03220 : Protein with RNI-like/FBD-like domains
RAP-DB (Rice) LOC_Os07g02760.2,LOC_Os07g02760.1 : OsFBD13 - F-box and FBD domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G168000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G284100 RCD1, putative, expressed -
2 Sobic.005G169800 GTPase of unknown function domain containing protein, putative, expressed K03665: GTPase
3 Sobic.003G336200 expressed protein -
4 Sobic.009G255300 OsClp8 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
5 Sobic.005G195000 RGH1A, putative, expressed -
6 Sobic.009G143900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@powdery mildew resistant protein 5, putative, expressed -
7 Sobic.003G249400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.001G017900 FAD binding protein, putative, expressed -
9 Sobic.003G161200 - -
10 Sobic.006G136900 transferase family protein, putative, expressed -
11 Sobic.008G163700 helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4
12 Sobic.006G101600 photoperiodic flowering time gene(PubMedID : 22394582)@FAD binding domain of DNA photolyase domain containing protein, expressed K12118: cryptochrome 1
13 Sobic.010G036000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.001G020600 cyclase/dehydrase family protein, expressed -
15 Sobic.003G179100 protein binding protein, putative, expressed K12821: PRPF40, pre-mRNA-processing factor 40
16 Sobic.004G327500 hydrolase, NUDIX family, domain containing protein, expressed -
17 Sobic.009G041400 rp1, putative, expressed -
18 Sobic.009G213300 OsPOP10 - Putative Prolyl Oligopeptidase homologue, expressed -
19 Sobic.003G137200 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA4 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
20 Sobic.003G126500 hydroxymethylglutaryl-CoA lyase, putative, expressed K01640: E4.1.3.4, HMGCL, hydroxymethylglutaryl-CoA lyase


Gene co-expression network
sample Sobic001G168000 Sobic001G168000 Sobic001G284100 Sobic001G284100 Sobic001G168000--Sobic001G284100 Sobic005G169800 Sobic005G169800 Sobic001G168000--Sobic005G169800 Sobic003G336200 Sobic003G336200 Sobic001G168000--Sobic003G336200 Sobic009G255300 Sobic009G255300 Sobic001G168000--Sobic009G255300 Sobic005G195000 Sobic005G195000 Sobic001G168000--Sobic005G195000 Sobic009G143900 Sobic009G143900 Sobic001G168000--Sobic009G143900 Sobic003G249400 Sobic003G249400 Sobic001G168000--Sobic003G249400 Sobic001G017900 Sobic001G017900 Sobic001G168000--Sobic001G017900 Sobic003G161200 Sobic003G161200 Sobic001G168000--Sobic003G161200 Sobic001G284100--Sobic001G168000 Sobic001G284100--Sobic009G255300 Sobic001G284100--Sobic001G017900 Sobic005G154900 Sobic005G154900 Sobic001G284100--Sobic005G154900 Sobic001G284100--Sobic003G336200 Sobic003G264700 Sobic003G264700 Sobic001G284100--Sobic003G264700 Sobic008G163700 Sobic008G163700 Sobic001G284100--Sobic008G163700 Sobic010G036000 Sobic010G036000 Sobic001G284100--Sobic010G036000 Sobic003G440400 Sobic003G440400 Sobic001G284100--Sobic003G440400 Sobic006G280900 Sobic006G280900 Sobic005G169800--Sobic006G280900 Sobic001G204200 Sobic001G204200 Sobic005G169800--Sobic001G204200 Sobic006G146400 Sobic006G146400 Sobic005G169800--Sobic006G146400 Sobic006G222650 Sobic006G222650 Sobic005G169800--Sobic006G222650 Sobic009G236000 Sobic009G236000 Sobic005G169800--Sobic009G236000 Sobic009G083100 Sobic009G083100 Sobic005G169800--Sobic009G083100 Sobic004G302400 Sobic004G302400 Sobic005G169800--Sobic004G302400 Sobic007G119300 Sobic007G119300 Sobic005G169800--Sobic007G119300 Sobic009G082500 Sobic009G082500 Sobic005G169800--Sobic009G082500 Sobic010G244600 Sobic010G244600 Sobic003G336200--Sobic010G244600 Sobic004G072000 Sobic004G072000 Sobic003G336200--Sobic004G072000 Sobic001G543500 Sobic001G543500 Sobic003G336200--Sobic001G543500 Sobic002G088200 Sobic002G088200 Sobic003G336200--Sobic002G088200 Sobic003G107100 Sobic003G107100 Sobic003G336200--Sobic003G107100 Sobic003G336200--Sobic009G255300 Sobic003G336200--Sobic005G169800 Sobic004G034500 Sobic004G034500 Sobic003G336200--Sobic004G034500 Sobic007G204400 Sobic007G204400 Sobic003G336200--Sobic007G204400 Sobic003G179100 Sobic003G179100 Sobic009G255300--Sobic003G179100 Sobic007G013500 Sobic007G013500 Sobic009G255300--Sobic007G013500 Sobic006G278500 Sobic006G278500 Sobic009G255300--Sobic006G278500 Sobic009G255300--Sobic010G036000 Sobic002G285300 Sobic002G285300 Sobic009G255300--Sobic002G285300 Sobic009G255300--Sobic004G072000 Sobic010G073300 Sobic010G073300 Sobic009G255300--Sobic010G073300 Sobic009G255300--Sobic003G440400 Sobic008G139900 Sobic008G139900 Sobic009G255300--Sobic008G139900 Sobic006G136900 Sobic006G136900 Sobic005G195000--Sobic006G136900 Sobic002G068500 Sobic002G068500 Sobic005G195000--Sobic002G068500 Sobic004G327500 Sobic004G327500 Sobic005G195000--Sobic004G327500 Sobic004G225450 Sobic004G225450 Sobic005G195000--Sobic004G225450 Sobic008G190700 Sobic008G190700 Sobic005G195000--Sobic008G190700 Sobic009G225300 Sobic009G225300 Sobic005G195000--Sobic009G225300 Sobic005G195000--Sobic010G036000 Sobic005G195000--Sobic003G179100 Sobic005G195000--Sobic009G083100 Sobic001G061000 Sobic001G061000 Sobic009G143900--Sobic001G061000 Sobic004G177500 Sobic004G177500 Sobic009G143900--Sobic004G177500 Sobic001G456650 Sobic001G456650 Sobic009G143900--Sobic001G456650 Sobic002G118400 Sobic002G118400 Sobic009G143900--Sobic002G118400 Sobic009G106300 Sobic009G106300 Sobic009G143900--Sobic009G106300 Sobic007G200200 Sobic007G200200 Sobic009G143900--Sobic007G200200 Sobic009G143900--Sobic003G249400 Sobic003G406240 Sobic003G406240 Sobic009G143900--Sobic003G406240 Sobic001G361750 Sobic001G361750 Sobic009G143900--Sobic001G361750 Sobic003G249400--Sobic004G177500 Sobic001G483200 Sobic001G483200 Sobic003G249400--Sobic001G483200 Sobic002G373200 Sobic002G373200 Sobic003G249400--Sobic002G373200 Sobic002G314950 Sobic002G314950 Sobic003G249400--Sobic002G314950 Sobic001G527900 Sobic001G527900 Sobic003G249400--Sobic001G527900 Sobic003G249400--Sobic009G143900 Sobic003G082401 Sobic003G082401 Sobic003G249400--Sobic003G082401 Sobic010G278300 Sobic010G278300 Sobic003G249400--Sobic010G278300 Sobic004G012100 Sobic004G012100 Sobic003G249400--Sobic004G012100 Sobic006G192400 Sobic006G192400 Sobic001G017900--Sobic006G192400 Sobic001G017900--Sobic002G285300 Sobic001G017900--Sobic008G163700 Sobic007G156101 Sobic007G156101 Sobic001G017900--Sobic007G156101 Sobic003G267900 Sobic003G267900 Sobic001G017900--Sobic003G267900 Sobic006G157300 Sobic006G157300 Sobic001G017900--Sobic006G157300 Sobic004G284400 Sobic004G284400 Sobic001G017900--Sobic004G284400 Sobic001G017900--Sobic009G255300 Sobic001G017900--Sobic010G036000 Sobic004G223350 Sobic004G223350 Sobic003G161200--Sobic004G223350 Sobic002G142350 Sobic002G142350 Sobic003G161200--Sobic002G142350 Sobic008G112400 Sobic008G112400 Sobic003G161200--Sobic008G112400 Sobic008G086100 Sobic008G086100 Sobic003G161200--Sobic008G086100 Sobic002G346250 Sobic002G346250 Sobic003G161200--Sobic002G346250 Sobic001G311700 Sobic001G311700 Sobic003G161200--Sobic001G311700 Sobic003G161200--Sobic005G169800 Sobic005G083866 Sobic005G083866 Sobic003G161200--Sobic005G083866 Sobic008G175600 Sobic008G175600 Sobic003G161200--Sobic008G175600
Octagon: transcription factors


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