Gene annotation
| Transcriptome id | Sobic.006G101600.4,Sobic.006G101600.1,Sobic.006G101600.2,Sobic.006G101600.3 |
|---|---|
| Synonym | Sb06g018510, CRY1, HY4, CRY2-2 , OOP2, ATCRY1, BLU1, CRYPTOCHROME 2 |
| Functional annotation | photoperiodic flowering time gene (PubMedID : 22394582) FAD binding domain of DNA photolyase domain containing protein, expressed |
| UniProt | Q8H6B3 , Q5MD22 , A0A1B6PL98 , I3RGW0 , A0A1Z5RE09 , A0A1B6PL97 |
| Pfam | PF12546 PF00875 PF03441 PF12546 PF03441 PF03441 PF00875 PF12546 |
| Panther DB | PTHR11455:SF24 PTHR11455 PTHR11455 PTHR11455:SF24 |
| NCBI CDD | KOG0133; Deoxyribodipyrimidine photolyase/cryptochrome |
| KEGG Orthology | K12118; cryptochrome 1 |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G08920 : cryptochrome 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os04g37920.1,LOC_Os04g37920.6 : FAD binding domain of DNA photolyase domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a011158 |
| Brachypodium | KQJ82910 , KQJ82911 |
| Barley | HORVU2Hr1G079220.2 , HORVU2Hr1G079220.3 , HORVU2Hr1G079220.5 , HORVU2Hr1G079220.1 , HORVU2Hr1G079220.4 , HORVU2Hr1G079220.6 , HORVU2Hr1G079220.7 |
| Wheat | TraesCS6A02G203300 , TraesCS6D02G187200 , TraesCS2A02G340000 , TraesCS6B02G224100 , TraesCS6B02G224100 , TraesCS2D02G317500 , TraesCS2B02G337900 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G137200 | "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA4 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 2 | Sobic.003G133700 | transporter, major facilitator family, putative, expressed | K08193: MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other |
| 3 | Sobic.003G347520 | - | - |
| 4 | Sobic.003G365200 | expressed protein | - |
| 5 | Sobic.008G192900 | -(PubMedID : 29751546)@sodium/hydrogen exchanger 7, putative, expressed | - |
| 6 | Sobic.001G010900 | OsGrx_S14 - glutaredoxin subgroup II, expressed | K07390: grxD, monothiol glutaredoxin |
| 7 | Sobic.006G074500 | protein of unknown function DUF1279 domain containing protein, expressed | - |
| 8 | Sobic.003G050800 | Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphate/phosphoenolpyruvate translocator-related protein, putative, expressed | K15283: solute carrier family 35, member E1 |
| 9 | Sobic.003G001650 | - | - |
| 10 | Sobic.004G144300 | - | - |
| 11 | Sobic.007G111500 | expressed protein | - |
| 12 | Sobic.001G184300 | potassium transporter, putative, expressed | K03549: KUP system potassium uptake protein |
| 13 | Sobic.003G362800 | - | - |
| 14 | Sobic.002G085600 | - | - |
| 15 | Sobic.006G249600 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed | - |
| 16 | Sobic.001G191300 | bile acid sodium symporter family protein, putative, expressed | K03453: bile acid:Na+ symporter, BASS family |
| 17 | Sobic.007G077466 | - | - |
| 18 | Sobic.003G155000 | inorganic H+ pyrophosphatase, putative, expressed | K01507: inorganic pyrophosphatase |
| 19 | Sobic.001G096200 | mitochondrial ribosomal protein S10, putative, expressed | K02946: RP-S10, MRPS10, small subunit ribosomal protein S10 |
| 20 | Sobic.010G000200 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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