Gene annotation
Transcriptome id Sobic.001G096200.2,Sobic.001G096200.3
Synonym Sb01g008620, RPS10
Functional annotation mitochondrial ribosomal protein S10, putative, expressed
UniProt C5X1A2
Pfam PF00338
Panther DB PTHR11700 PTHR11700:SF7
NCBI CDD -
KEGG Orthology K02946; RP-S10, MRPS10, small subunit ribosomal protein S10
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G22300 : ribosomal protein S10
RAP-DB (Rice) LOC_Os12g33240.1 : mitochondrial ribosomal protein S10, putative, expressed
MaizeGDB (Corn) Zm00025a008075 , Zm00025a016846
Brachypodium KQJ83631
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G310400 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
2 Sobic.004G026000 ankyrin repeat domain-containing protein, chloroplast precursor, putative, expressed -
3 Sobic.001G520000 auxin efflux carrier component, putative, expressed -
4 Sobic.004G314100 GS9(Ortholog in rice:Zhao et al.(2018))(PubMedID : 31659890)@expressed protein -
5 Sobic.003G155800 dnaJ homolog subfamily B member 11 precursor, putative, expressed K09517: DnaJ homolog subfamily B member 11
6 Sobic.006G243000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCB4, putative, expressed -
7 Sobic.003G118500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
8 Sobic.003G253700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
9 Sobic.004G231501 - -
10 Sobic.004G144300 - -
11 Sobic.008G160100 - -
12 Sobic.001G213300 cytochrome P450, putative, expressed K15402: fatty acid omega-hydroxylase
13 Sobic.006G213350 - -
14 Sobic.002G399000 expressed protein -
15 Sobic.001G028500 expressed protein -
16 Sobic.001G104100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ACT domain containing protein, expressed -
17 Sobic.007G061500 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
18 Sobic.002G197400 expressed protein -
19 Sobic.003G106100 expressed protein -
20 Sobic.003G365200 expressed protein -


Gene co-expression network
sample Sobic001G096200 Sobic001G096200 Sobic004G310400 Sobic004G310400 Sobic001G096200--Sobic004G310400 Sobic004G026000 Sobic004G026000 Sobic001G096200--Sobic004G026000 Sobic001G520000 Sobic001G520000 Sobic001G096200--Sobic001G520000 Sobic004G314100 Sobic004G314100 Sobic001G096200--Sobic004G314100 Sobic003G155800 Sobic003G155800 Sobic001G096200--Sobic003G155800 Sobic006G243000 Sobic006G243000 Sobic001G096200--Sobic006G243000 Sobic003G118500 Sobic003G118500 Sobic001G096200--Sobic003G118500 Sobic003G253700 Sobic003G253700 Sobic001G096200--Sobic003G253700 Sobic004G231501 Sobic004G231501 Sobic001G096200--Sobic004G231501 Sobic004G310400--Sobic004G026000 Sobic004G144300 Sobic004G144300 Sobic004G310400--Sobic004G144300 Sobic004G310400--Sobic001G096200 Sobic004G310400--Sobic004G314100 Sobic004G310400--Sobic003G118500 Sobic001G104100 Sobic001G104100 Sobic004G310400--Sobic001G104100 Sobic006G121200 Sobic006G121200 Sobic004G310400--Sobic006G121200 Sobic007G213500 Sobic007G213500 Sobic004G310400--Sobic007G213500 Sobic008G160100 Sobic008G160100 Sobic004G310400--Sobic008G160100 Sobic004G026000--Sobic004G310400 Sobic004G026000--Sobic007G213500 Sobic004G026000--Sobic004G314100 Sobic004G026000--Sobic001G104100 Sobic004G026000--Sobic001G096200 Sobic004G026000--Sobic006G121200 Sobic003G106100 Sobic003G106100 Sobic004G026000--Sobic003G106100 Sobic004G026000--Sobic004G231501 Sobic001G028500 Sobic001G028500 Sobic004G026000--Sobic001G028500 Sobic001G520000--Sobic003G253700 Sobic006G213350 Sobic006G213350 Sobic001G520000--Sobic006G213350 Sobic001G483001 Sobic001G483001 Sobic001G520000--Sobic001G483001 Sobic010G012200 Sobic010G012200 Sobic001G520000--Sobic010G012200 Sobic003G155000 Sobic003G155000 Sobic001G520000--Sobic003G155000 Sobic001G520000--Sobic008G160100 Sobic006G157450 Sobic006G157450 Sobic001G520000--Sobic006G157450 Sobic001G520000--Sobic001G096200 Sobic008G170800 Sobic008G170800 Sobic001G520000--Sobic008G170800 Sobic007G061500 Sobic007G061500 Sobic004G314100--Sobic007G061500 Sobic004G314100--Sobic003G106100 Sobic004G314100--Sobic004G231501 Sobic004G314100--Sobic001G028500 Sobic004G314100--Sobic004G026000 Sobic004G314100--Sobic007G213500 Sobic004G314100--Sobic004G310400 Sobic004G314100--Sobic001G104100 Sobic007G017300 Sobic007G017300 Sobic004G314100--Sobic007G017300 Sobic003G362800 Sobic003G362800 Sobic003G155800--Sobic003G362800 Sobic004G181000 Sobic004G181000 Sobic003G155800--Sobic004G181000 Sobic003G155800--Sobic003G253700 Sobic005G063600 Sobic005G063600 Sobic003G155800--Sobic005G063600 Sobic009G223900 Sobic009G223900 Sobic003G155800--Sobic009G223900 Sobic009G252600 Sobic009G252600 Sobic003G155800--Sobic009G252600 Sobic002G001500 Sobic002G001500 Sobic003G155800--Sobic002G001500 Sobic003G155800--Sobic001G520000 Sobic002G206900 Sobic002G206900 Sobic003G155800--Sobic002G206900 Sobic008G143901 Sobic008G143901 Sobic006G243000--Sobic008G143901 Sobic006G243000--Sobic001G096200 Sobic006G243000--Sobic006G213350 Sobic002G395900 Sobic002G395900 Sobic006G243000--Sobic002G395900 Sobic006G243000--Sobic001G483001 Sobic006G243000--Sobic001G520000 Sobic006G243000--Sobic004G026000 Sobic009G045100 Sobic009G045100 Sobic006G243000--Sobic009G045100 Sobic001G018550 Sobic001G018550 Sobic006G243000--Sobic001G018550 Sobic004G305300 Sobic004G305300 Sobic003G118500--Sobic004G305300 Sobic003G118500--Sobic001G104100 Sobic001G191300 Sobic001G191300 Sobic003G118500--Sobic001G191300 Sobic003G118500--Sobic004G310400 Sobic001G350300 Sobic001G350300 Sobic003G118500--Sobic001G350300 Sobic003G118500--Sobic004G026000 Sobic003G118500--Sobic001G096200 Sobic007G077466 Sobic007G077466 Sobic003G118500--Sobic007G077466 Sobic003G118500--Sobic003G362800 Sobic003G253700--Sobic003G155000 Sobic003G253700--Sobic001G520000 Sobic003G365200 Sobic003G365200 Sobic003G253700--Sobic003G365200 Sobic003G253700--Sobic010G012200 Sobic006G249600 Sobic006G249600 Sobic003G253700--Sobic006G249600 Sobic003G253700--Sobic006G157450 Sobic003G253700--Sobic003G155800 Sobic003G253700--Sobic008G170800 Sobic003G262600 Sobic003G262600 Sobic003G253700--Sobic003G262600 Sobic004G231501--Sobic001G028500 Sobic004G231501--Sobic007G061500 Sobic004G231501--Sobic004G314100 Sobic004G231501--Sobic003G106100 Sobic009G004500 Sobic009G004500 Sobic004G231501--Sobic009G004500 Sobic004G231501--Sobic007G017300 Sobic004G202750 Sobic004G202750 Sobic004G231501--Sobic004G202750 Sobic001G483200 Sobic001G483200 Sobic004G231501--Sobic001G483200 Sobic001G368000 Sobic001G368000 Sobic004G231501--Sobic001G368000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.