Gene annotation
Transcriptome id Sobic.007G061500.1
Synonym Sb07g004930, MRE11, ATMRE11
Functional annotation double-strand break repair protein MRE11, putative, expressed
UniProt A0A1Z5R8E7
Pfam PF00149 PF04152
Panther DB PTHR10139 PTHR10139:SF1
NCBI CDD -
KEGG Orthology K10865; double-strand break repair protein MRE11
Gene Ontology GO:0016787; hydrolase activity GO:0006302double-strand break repair GO:0005634nucleus GO:0004519endonuclease activity GO:0006259DNA metabolic process GO:0004527exonuclease activity


Orthologs (automatic annotation)
TAIR AT5G54260 : DNA repair and meiosis protein (Mre11)
RAP-DB (Rice) LOC_Os04g54340.1 : double-strand break repair protein MRE11, putative, expressed
MaizeGDB (Corn) Zm00025a030011 , Zm00025a030012
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G231501 - -
2 Sobic.001G028500 expressed protein -
3 Sobic.004G314100 GS9(Ortholog in rice:Zhao et al.(2018))(PubMedID : 31659890)@expressed protein -
4 Sobic.009G004500 expressed protein -
5 Sobic.007G017300 endoglucanase, putative, expressed -
6 Sobic.001G368000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@annexin, putative, expressed -
7 Sobic.003G093500 protein binding protein, putative, expressed -
8 Sobic.003G106100 expressed protein -
9 Sobic.001G483200 ataxin-2 C-terminal region family protein, expressed -
10 Sobic.005G155001 - -
11 Sobic.001G341900 domain of unknown function domain containing protein, expressed -
12 Sobic.007G213500 expressed protein -
13 Sobic.009G045100 proline synthetase co-transcribed bacterial homolog protein, putative, expressed K06997: yggS, PLP dependent protein
14 Sobic.008G192800 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
15 Sobic.001G060200 - -
16 Sobic.004G202750 - -
17 Sobic.002G013600 expressed protein -
18 Sobic.009G114900 - -
19 Sobic.001G071700 protein kinase family protein, putative, expressed -
20 Sobic.002G395900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@nodulation protein-related, putative, expressed -


Gene co-expression network
sample Sobic007G061500 Sobic007G061500 Sobic004G231501 Sobic004G231501 Sobic007G061500--Sobic004G231501 Sobic001G028500 Sobic001G028500 Sobic007G061500--Sobic001G028500 Sobic004G314100 Sobic004G314100 Sobic007G061500--Sobic004G314100 Sobic009G004500 Sobic009G004500 Sobic007G061500--Sobic009G004500 Sobic007G017300 Sobic007G017300 Sobic007G061500--Sobic007G017300 Sobic001G368000 Sobic001G368000 Sobic007G061500--Sobic001G368000 Sobic003G093500 Sobic003G093500 Sobic007G061500--Sobic003G093500 Sobic003G106100 Sobic003G106100 Sobic007G061500--Sobic003G106100 Sobic001G483200 Sobic001G483200 Sobic007G061500--Sobic001G483200 Sobic004G231501--Sobic001G028500 Sobic004G231501--Sobic007G061500 Sobic004G231501--Sobic004G314100 Sobic004G231501--Sobic003G106100 Sobic004G231501--Sobic009G004500 Sobic004G231501--Sobic007G017300 Sobic004G202750 Sobic004G202750 Sobic004G231501--Sobic004G202750 Sobic004G231501--Sobic001G483200 Sobic004G231501--Sobic001G368000 Sobic001G028500--Sobic004G231501 Sobic001G028500--Sobic007G061500 Sobic001G028500--Sobic009G004500 Sobic001G028500--Sobic003G106100 Sobic001G028500--Sobic004G202750 Sobic001G028500--Sobic004G314100 Sobic001G028500--Sobic007G017300 Sobic001G028500--Sobic001G483200 Sobic001G060200 Sobic001G060200 Sobic001G028500--Sobic001G060200 Sobic004G314100--Sobic007G061500 Sobic004G314100--Sobic003G106100 Sobic004G314100--Sobic004G231501 Sobic004G314100--Sobic001G028500 Sobic004G026000 Sobic004G026000 Sobic004G314100--Sobic004G026000 Sobic007G213500 Sobic007G213500 Sobic004G314100--Sobic007G213500 Sobic004G310400 Sobic004G310400 Sobic004G314100--Sobic004G310400 Sobic001G104100 Sobic001G104100 Sobic004G314100--Sobic001G104100 Sobic004G314100--Sobic007G017300 Sobic009G004500--Sobic007G017300 Sobic009G004500--Sobic001G483200 Sobic005G155001 Sobic005G155001 Sobic009G004500--Sobic005G155001 Sobic009G004500--Sobic001G368000 Sobic009G004500--Sobic007G061500 Sobic009G004500--Sobic001G028500 Sobic009G004500--Sobic003G093500 Sobic010G021401 Sobic010G021401 Sobic009G004500--Sobic010G021401 Sobic009G004500--Sobic001G060200 Sobic007G017300--Sobic001G368000 Sobic007G017300--Sobic001G483200 Sobic007G017300--Sobic009G004500 Sobic007G017300--Sobic005G155001 Sobic007G017300--Sobic007G061500 Sobic007G017300--Sobic003G093500 Sobic007G017300--Sobic007G213500 Sobic007G017300--Sobic001G028500 Sobic001G468200 Sobic001G468200 Sobic007G017300--Sobic001G468200 Sobic001G368000--Sobic007G017300 Sobic001G368000--Sobic009G004500 Sobic001G368000--Sobic001G483200 Sobic001G368000--Sobic007G061500 Sobic001G490600 Sobic001G490600 Sobic001G368000--Sobic001G490600 Sobic001G368000--Sobic005G155001 Sobic001G368000--Sobic001G468200 Sobic001G368000--Sobic007G213500 Sobic009G184500 Sobic009G184500 Sobic001G368000--Sobic009G184500 Sobic003G093500--Sobic009G004500 Sobic003G093500--Sobic007G061500 Sobic003G093500--Sobic007G017300 Sobic001G341900 Sobic001G341900 Sobic003G093500--Sobic001G341900 Sobic008G192800 Sobic008G192800 Sobic003G093500--Sobic008G192800 Sobic009G045100 Sobic009G045100 Sobic003G093500--Sobic009G045100 Sobic003G093500--Sobic005G155001 Sobic004G224100 Sobic004G224100 Sobic003G093500--Sobic004G224100 Sobic003G093500--Sobic001G060200 Sobic003G106100--Sobic004G314100 Sobic003G106100--Sobic001G028500 Sobic003G106100--Sobic004G231501 Sobic003G106100--Sobic007G061500 Sobic003G106100--Sobic001G104100 Sobic003G106100--Sobic007G213500 Sobic009G199900 Sobic009G199900 Sobic003G106100--Sobic009G199900 Sobic003G106100--Sobic001G060200 Sobic003G106100--Sobic004G026000 Sobic001G483200--Sobic007G017300 Sobic001G483200--Sobic005G155001 Sobic001G483200--Sobic009G004500 Sobic001G483200--Sobic001G368000 Sobic001G483200--Sobic007G061500 Sobic001G483200--Sobic007G213500 Sobic001G527900 Sobic001G527900 Sobic001G483200--Sobic001G527900 Sobic001G483200--Sobic001G028500 Sobic001G483200--Sobic001G468200
Octagon: transcription factors


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