Gene annotation
Transcriptome id Sobic.001G071700.1
Synonym PERK4, Sb01g006470
Functional annotation protein kinase family protein, putative, expressed
UniProt C5WZ44
Pfam PF07714
Panther DB PTHR27001 PTHR27001:SF16
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT2G18470 : roline-rich extensin-like receptor kinase 4
RAP-DB (Rice) LOC_Os03g56470.1 : protein kinase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a008389 , Zm00025a003642 , Zm00025a044231 , Zm00025a038766 , Zm00025a001449 , Zm00025a016188 , Zm00025a052320
Brachypodium KQK20993 , PNT70918 , PNT75949 , KQK12952 , KQK12953 , KQK12954 , KQK12955
Barley HORVU0Hr1G013830.3 , HORVU0Hr1G013830.2 , HORVU0Hr1G013830.1 , HORVU0Hr1G013830.7 , HORVU0Hr1G013830.6 , HORVU0Hr1G013830.5 , HORVU0Hr1G013830.4 , HORVU0Hr1G013830.8 , HORVU4Hr1G065270.16 , HORVU4Hr1G065270.17 , HORVU4Hr1G065270.14 , HORVU4Hr1G065270.15 , HORVU4Hr1G065270.12 , HORVU4Hr1G065270.13 , HORVU4Hr1G065270.10 , HORVU4Hr1G065270.11 , HORVU7Hr1G047750.8 , HORVU7Hr1G047750.1 , HORVU7Hr1G047750.2 , HORVU7Hr1G047750.3 , HORVU7Hr1G047750.4 , HORVU7Hr1G047750.6 , HORVU7Hr1G047750.7 , HORVU4Hr1G065270.8 , HORVU4Hr1G065270.9 , HORVU4Hr1G065270.4 , HORVU4Hr1G065270.5 , HORVU4Hr1G065270.6 , HORVU4Hr1G065270.7 , HORVU4Hr1G065270.1 , HORVU4Hr1G065270.2 , HORVU4Hr1G065270.3 , HORVU3Hr1G000770.9 , HORVU3Hr1G000770.8 , HORVU3Hr1G000770.6 , HORVU3Hr1G000770.4 , HORVU3Hr1G000770.3 , HORVU3Hr1G000770.2 , HORVU3Hr1G000770.1 , HORVU3Hr1G000770.17 , HORVU3Hr1G000770.16 , HORVU3Hr1G000770.15 , HORVU3Hr1G000770.14 , HORVU3Hr1G000770.13 , HORVU3Hr1G000770.12 , HORVU3Hr1G000770.11 , HORVU3Hr1G000770.10 , HORVU7Hr1G047570.1 , HORVU7Hr1G047570.2 , HORVU7Hr1G047570.3 , HORVU7Hr1G047570.4 , HORVU7Hr1G047570.5
Wheat TraesCS4B02G233600 , TraesCS3A02G003900 , TraesCS7A02G231900 , TraesCS1B02G350100 , TraesCS4A02G077500 , TraesCS4A02G077500 , TraesCS3B02G008600 , TraesCS3B02G008600 , TraesCS7A02G231900 , TraesCS1B02G001500 , TraesCS5A02G411300 , TraesCS3D02G005400 , TraesCS3D02G005400 , TraesCS5B02G415000 , TraesCS5B02G415000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G350800 - -
2 Sobic.004G202750 - -
3 Sobic.004G231501 - -
4 Sobic.001G033200 GRAS family transcription factor domain containing protein, expressed -
5 Sobic.007G061500 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
6 Sobic.001G028500 expressed protein -
7 Sobic.006G121200 high affinity nitrate transporter, putative, expressed -
8 Sobic.002G320700 expressed protein -
9 Sobic.004G314100 GS9(Ortholog in rice:Zhao et al.(2018))(PubMedID : 31659890)@expressed protein -
10 Sobic.004G310400 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
11 Sobic.001G483200 ataxin-2 C-terminal region family protein, expressed -
12 Sobic.001G361750 - -
13 Sobic.001G368000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@annexin, putative, expressed -
14 Sobic.007G213500 expressed protein -
15 Sobic.007G017300 endoglucanase, putative, expressed -
16 Sobic.004G026000 ankyrin repeat domain-containing protein, chloroplast precursor, putative, expressed -
17 Sobic.009G004500 expressed protein -
18 Sobic.001G104100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ACT domain containing protein, expressed -
19 Sobic.001G468200 MT-A70 domain containing protein, expressed -
20 Sobic.010G261500 acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase


Gene co-expression network
sample Sobic001G071700 Sobic001G071700 Sobic001G350800 Sobic001G350800 Sobic001G071700--Sobic001G350800 Sobic004G202750 Sobic004G202750 Sobic001G071700--Sobic004G202750 Sobic004G231501 Sobic004G231501 Sobic001G071700--Sobic004G231501 Sobic001G033200 Sobic001G033200 Sobic001G071700--Sobic001G033200 Sobic007G061500 Sobic007G061500 Sobic001G071700--Sobic007G061500 Sobic001G028500 Sobic001G028500 Sobic001G071700--Sobic001G028500 Sobic006G121200 Sobic006G121200 Sobic001G071700--Sobic006G121200 Sobic002G320700 Sobic002G320700 Sobic001G071700--Sobic002G320700 Sobic004G314100 Sobic004G314100 Sobic001G071700--Sobic004G314100 Sobic001G350800--Sobic001G071700 Sobic001G350800--Sobic004G202750 Sobic001G350800--Sobic001G028500 Sobic004G190800 Sobic004G190800 Sobic001G350800--Sobic004G190800 Sobic001G350800--Sobic007G061500 Sobic001G350800--Sobic004G231501 Sobic010G261500 Sobic010G261500 Sobic001G350800--Sobic010G261500 Sobic001G350800--Sobic004G314100 Sobic001G104100 Sobic001G104100 Sobic001G350800--Sobic001G104100 Sobic004G202750--Sobic001G028500 Sobic004G202750--Sobic001G350800 Sobic004G202750--Sobic002G320700 Sobic009G004500 Sobic009G004500 Sobic004G202750--Sobic009G004500 Sobic004G202750--Sobic004G231501 Sobic004G202750--Sobic001G071700 Sobic004G202750--Sobic007G061500 Sobic004G202750--Sobic001G104100 Sobic001G483200 Sobic001G483200 Sobic004G202750--Sobic001G483200 Sobic004G231501--Sobic001G028500 Sobic004G231501--Sobic007G061500 Sobic004G231501--Sobic004G314100 Sobic003G106100 Sobic003G106100 Sobic004G231501--Sobic003G106100 Sobic004G231501--Sobic009G004500 Sobic007G017300 Sobic007G017300 Sobic004G231501--Sobic007G017300 Sobic004G231501--Sobic004G202750 Sobic004G231501--Sobic001G483200 Sobic001G368000 Sobic001G368000 Sobic004G231501--Sobic001G368000 Sobic001G033200--Sobic002G320700 Sobic001G361750 Sobic001G361750 Sobic001G033200--Sobic001G361750 Sobic001G033200--Sobic001G071700 Sobic001G033200--Sobic004G231501 Sobic001G033200--Sobic001G483200 Sobic001G033200--Sobic001G028500 Sobic001G033200--Sobic007G061500 Sobic001G456650 Sobic001G456650 Sobic001G033200--Sobic001G456650 Sobic001G033200--Sobic004G202750 Sobic007G061500--Sobic004G231501 Sobic007G061500--Sobic001G028500 Sobic007G061500--Sobic004G314100 Sobic007G061500--Sobic009G004500 Sobic007G061500--Sobic007G017300 Sobic007G061500--Sobic001G368000 Sobic003G093500 Sobic003G093500 Sobic007G061500--Sobic003G093500 Sobic007G061500--Sobic003G106100 Sobic007G061500--Sobic001G483200 Sobic001G028500--Sobic004G231501 Sobic001G028500--Sobic007G061500 Sobic001G028500--Sobic009G004500 Sobic001G028500--Sobic003G106100 Sobic001G028500--Sobic004G202750 Sobic001G028500--Sobic004G314100 Sobic001G028500--Sobic007G017300 Sobic001G028500--Sobic001G483200 Sobic001G060200 Sobic001G060200 Sobic001G028500--Sobic001G060200 Sobic007G213500 Sobic007G213500 Sobic006G121200--Sobic007G213500 Sobic004G026000 Sobic004G026000 Sobic006G121200--Sobic004G026000 Sobic006G121200--Sobic004G314100 Sobic004G310400 Sobic004G310400 Sobic006G121200--Sobic004G310400 Sobic001G468200 Sobic001G468200 Sobic006G121200--Sobic001G468200 Sobic006G121200--Sobic001G071700 Sobic009G235100 Sobic009G235100 Sobic006G121200--Sobic009G235100 Sobic002G123700 Sobic002G123700 Sobic006G121200--Sobic002G123700 Sobic006G121200--Sobic007G061500 Sobic002G320700--Sobic004G202750 Sobic006G170800 Sobic006G170800 Sobic002G320700--Sobic006G170800 Sobic002G320700--Sobic001G033200 Sobic002G320700--Sobic001G104100 Sobic001G350300 Sobic001G350300 Sobic002G320700--Sobic001G350300 Sobic002G320700--Sobic001G028500 Sobic004G350600 Sobic004G350600 Sobic002G320700--Sobic004G350600 Sobic002G320700--Sobic001G071700 Sobic002G399000 Sobic002G399000 Sobic002G320700--Sobic002G399000 Sobic004G314100--Sobic007G061500 Sobic004G314100--Sobic003G106100 Sobic004G314100--Sobic004G231501 Sobic004G314100--Sobic001G028500 Sobic004G314100--Sobic004G026000 Sobic004G314100--Sobic007G213500 Sobic004G314100--Sobic004G310400 Sobic004G314100--Sobic001G104100 Sobic004G314100--Sobic007G017300
Octagon: transcription factors


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