Gene annotation
Transcriptome id Sobic.004G202750.1
Synonym -
Functional annotation -
UniProt A0A1Z5RP73
Pfam PF07817
Panther DB PTHR12960 PTHR12960:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016973; poly(A)+ mRNA export from nucleus GO:0005643nuclear pore


Orthologs (automatic annotation)
TAIR AT1G13120 : embryo defective 1745
RAP-DB (Rice) LOC_Os02g38250.1 : EMB1745, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU6Hr1G053730.1 , HORVU6Hr1G053730.7 , HORVU6Hr1G053730.4 , HORVU6Hr1G053730.5 , HORVU6Hr1G053730.8 , HORVU6Hr1G053730.9 , HORVU6Hr1G053730.10 , HORVU6Hr1G053730.11 , HORVU6Hr1G053730.12 , HORVU6Hr1G053730.14 , HORVU6Hr1G053730.15 , HORVU6Hr1G053730.16 , HORVU6Hr1G053730.17
Wheat TraesCS6A02G210300 , TraesCS1B02G063500 , TraesCS6D02G193500 , TraesCS6D02G193500 , TraesCS6D02G193500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G028500 expressed protein -
2 Sobic.001G350800 - -
3 Sobic.002G320700 expressed protein -
4 Sobic.009G004500 expressed protein -
5 Sobic.004G231501 - -
6 Sobic.001G071700 protein kinase family protein, putative, expressed -
7 Sobic.007G061500 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
8 Sobic.001G104100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ACT domain containing protein, expressed -
9 Sobic.001G483200 ataxin-2 C-terminal region family protein, expressed -
10 Sobic.009G147600 pentatricopeptide, putative, expressed -
11 Sobic.009G199900 osFTL10 FT-Like10 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
12 Sobic.001G368000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@annexin, putative, expressed -
13 Sobic.007G017300 endoglucanase, putative, expressed -
14 Sobic.002G399000 expressed protein -
15 Sobic.004G314100 GS9(Ortholog in rice:Zhao et al.(2018))(PubMedID : 31659890)@expressed protein -
16 Sobic.006G170800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
17 Sobic.001G490600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed -
18 Sobic.009G184500 cysteine proteinase inhibitor precursor protein, putative, expressed -
19 Sobic.003G106100 expressed protein -
20 Sobic.001G312801 - -


Gene co-expression network
sample Sobic004G202750 Sobic004G202750 Sobic001G028500 Sobic001G028500 Sobic004G202750--Sobic001G028500 Sobic001G350800 Sobic001G350800 Sobic004G202750--Sobic001G350800 Sobic002G320700 Sobic002G320700 Sobic004G202750--Sobic002G320700 Sobic009G004500 Sobic009G004500 Sobic004G202750--Sobic009G004500 Sobic004G231501 Sobic004G231501 Sobic004G202750--Sobic004G231501 Sobic001G071700 Sobic001G071700 Sobic004G202750--Sobic001G071700 Sobic007G061500 Sobic007G061500 Sobic004G202750--Sobic007G061500 Sobic001G104100 Sobic001G104100 Sobic004G202750--Sobic001G104100 Sobic001G483200 Sobic001G483200 Sobic004G202750--Sobic001G483200 Sobic001G028500--Sobic004G231501 Sobic001G028500--Sobic007G061500 Sobic001G028500--Sobic009G004500 Sobic003G106100 Sobic003G106100 Sobic001G028500--Sobic003G106100 Sobic001G028500--Sobic004G202750 Sobic004G314100 Sobic004G314100 Sobic001G028500--Sobic004G314100 Sobic007G017300 Sobic007G017300 Sobic001G028500--Sobic007G017300 Sobic001G028500--Sobic001G483200 Sobic001G060200 Sobic001G060200 Sobic001G028500--Sobic001G060200 Sobic001G350800--Sobic001G071700 Sobic001G350800--Sobic004G202750 Sobic001G350800--Sobic001G028500 Sobic004G190800 Sobic004G190800 Sobic001G350800--Sobic004G190800 Sobic001G350800--Sobic007G061500 Sobic001G350800--Sobic004G231501 Sobic010G261500 Sobic010G261500 Sobic001G350800--Sobic010G261500 Sobic001G350800--Sobic004G314100 Sobic001G350800--Sobic001G104100 Sobic002G320700--Sobic004G202750 Sobic006G170800 Sobic006G170800 Sobic002G320700--Sobic006G170800 Sobic001G033200 Sobic001G033200 Sobic002G320700--Sobic001G033200 Sobic002G320700--Sobic001G104100 Sobic001G350300 Sobic001G350300 Sobic002G320700--Sobic001G350300 Sobic002G320700--Sobic001G028500 Sobic004G350600 Sobic004G350600 Sobic002G320700--Sobic004G350600 Sobic002G320700--Sobic001G071700 Sobic002G399000 Sobic002G399000 Sobic002G320700--Sobic002G399000 Sobic009G004500--Sobic007G017300 Sobic009G004500--Sobic001G483200 Sobic005G155001 Sobic005G155001 Sobic009G004500--Sobic005G155001 Sobic001G368000 Sobic001G368000 Sobic009G004500--Sobic001G368000 Sobic009G004500--Sobic007G061500 Sobic009G004500--Sobic001G028500 Sobic003G093500 Sobic003G093500 Sobic009G004500--Sobic003G093500 Sobic010G021401 Sobic010G021401 Sobic009G004500--Sobic010G021401 Sobic009G004500--Sobic001G060200 Sobic004G231501--Sobic001G028500 Sobic004G231501--Sobic007G061500 Sobic004G231501--Sobic004G314100 Sobic004G231501--Sobic003G106100 Sobic004G231501--Sobic009G004500 Sobic004G231501--Sobic007G017300 Sobic004G231501--Sobic004G202750 Sobic004G231501--Sobic001G483200 Sobic004G231501--Sobic001G368000 Sobic001G071700--Sobic001G350800 Sobic001G071700--Sobic004G202750 Sobic001G071700--Sobic004G231501 Sobic001G071700--Sobic001G033200 Sobic001G071700--Sobic007G061500 Sobic001G071700--Sobic001G028500 Sobic006G121200 Sobic006G121200 Sobic001G071700--Sobic006G121200 Sobic001G071700--Sobic002G320700 Sobic001G071700--Sobic004G314100 Sobic007G061500--Sobic004G231501 Sobic007G061500--Sobic001G028500 Sobic007G061500--Sobic004G314100 Sobic007G061500--Sobic009G004500 Sobic007G061500--Sobic007G017300 Sobic007G061500--Sobic001G368000 Sobic007G061500--Sobic003G093500 Sobic007G061500--Sobic003G106100 Sobic007G061500--Sobic001G483200 Sobic009G199900 Sobic009G199900 Sobic001G104100--Sobic009G199900 Sobic004G026000 Sobic004G026000 Sobic001G104100--Sobic004G026000 Sobic001G104100--Sobic003G106100 Sobic001G104100--Sobic004G314100 Sobic001G104100--Sobic001G028500 Sobic003G118500 Sobic003G118500 Sobic001G104100--Sobic003G118500 Sobic001G104100--Sobic002G320700 Sobic001G104100--Sobic002G399000 Sobic007G213500 Sobic007G213500 Sobic001G104100--Sobic007G213500 Sobic001G483200--Sobic007G017300 Sobic001G483200--Sobic005G155001 Sobic001G483200--Sobic009G004500 Sobic001G483200--Sobic001G368000 Sobic001G483200--Sobic007G061500 Sobic001G483200--Sobic007G213500 Sobic001G527900 Sobic001G527900 Sobic001G483200--Sobic001G527900 Sobic001G483200--Sobic001G028500 Sobic001G468200 Sobic001G468200 Sobic001G483200--Sobic001G468200
Octagon: transcription factors


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