Gene annotation
Transcriptome id Sobic.009G147600.1
Synonym
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6P8U1
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF747
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G01390 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os10g21470.2 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a037334 , Zm00025a043763
Brachypodium KQK14211 , KQK14210 , KQK14212
Barley HORVU7Hr1G100130.7 , HORVU7Hr1G100130.19 , HORVU7Hr1G100130.11 , HORVU7Hr1G100130.12 , HORVU7Hr1G100130.20
Wheat TraesCS7A02G438200 , TraesCS7D02G428100 , TraesCS7B02G337200
Populus -


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cDNA sequences
Sobic.009G147600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G202750 - -
2 Sobic.001G028500 expressed protein -
3 Sobic.001G312801 - -
4 Sobic.004G149000 - -
5 Sobic.002G320700 expressed protein -
6 Sobic.001G104100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ACT domain containing protein, expressed -
7 Sobic.003G030200 phosphopantothenoylcysteine decarboxylase, putative, expressed K01598: PPCDC, phosphopantothenoylcysteine decarboxylase
8 Sobic.005G025400 CAMK_CAMK_like.42 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
9 Sobic.004G190800 galactosyltransferase family protein, putative, expressed K14413: beta-1,3-galactosyltransferase
10 Sobic.006G170800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
11 Sobic.003G106100 expressed protein -
12 Sobic.001G490600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed -
13 Sobic.004G231501 - -
14 Sobic.001G368000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@annexin, putative, expressed -
15 Sobic.002G399000 expressed protein -
16 Sobic.010G242000 phytosulfokine receptor precursor, putative, expressed -
17 Sobic.009G199900 osFTL10 FT-Like10 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
18 Sobic.001G350800 - -
19 Sobic.002G413800 Spc97 / Spc98 family protein, putative, expressed -
20 Sobic.007G061500 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11


Gene co-expression network
sample Sobic009G147600 Sobic009G147600 Sobic004G202750 Sobic004G202750 Sobic009G147600--Sobic004G202750 Sobic001G028500 Sobic001G028500 Sobic009G147600--Sobic001G028500 Sobic001G312801 Sobic001G312801 Sobic009G147600--Sobic001G312801 Sobic004G149000 Sobic004G149000 Sobic009G147600--Sobic004G149000 Sobic002G320700 Sobic002G320700 Sobic009G147600--Sobic002G320700 Sobic001G104100 Sobic001G104100 Sobic009G147600--Sobic001G104100 Sobic003G030200 Sobic003G030200 Sobic009G147600--Sobic003G030200 Sobic005G025400 Sobic005G025400 Sobic009G147600--Sobic005G025400 Sobic004G190800 Sobic004G190800 Sobic009G147600--Sobic004G190800 Sobic004G202750--Sobic001G028500 Sobic001G350800 Sobic001G350800 Sobic004G202750--Sobic001G350800 Sobic004G202750--Sobic002G320700 Sobic009G004500 Sobic009G004500 Sobic004G202750--Sobic009G004500 Sobic004G231501 Sobic004G231501 Sobic004G202750--Sobic004G231501 Sobic001G071700 Sobic001G071700 Sobic004G202750--Sobic001G071700 Sobic007G061500 Sobic007G061500 Sobic004G202750--Sobic007G061500 Sobic004G202750--Sobic001G104100 Sobic001G483200 Sobic001G483200 Sobic004G202750--Sobic001G483200 Sobic001G028500--Sobic004G231501 Sobic001G028500--Sobic007G061500 Sobic001G028500--Sobic009G004500 Sobic003G106100 Sobic003G106100 Sobic001G028500--Sobic003G106100 Sobic001G028500--Sobic004G202750 Sobic004G314100 Sobic004G314100 Sobic001G028500--Sobic004G314100 Sobic007G017300 Sobic007G017300 Sobic001G028500--Sobic007G017300 Sobic001G028500--Sobic001G483200 Sobic001G060200 Sobic001G060200 Sobic001G028500--Sobic001G060200 Sobic004G288900 Sobic004G288900 Sobic001G312801--Sobic004G288900 Sobic001G490600 Sobic001G490600 Sobic001G312801--Sobic001G490600 Sobic001G368000 Sobic001G368000 Sobic001G312801--Sobic001G368000 Sobic009G184500 Sobic009G184500 Sobic001G312801--Sobic009G184500 Sobic001G312801--Sobic004G190800 Sobic001G312801--Sobic007G017300 Sobic009G170301 Sobic009G170301 Sobic001G312801--Sobic009G170301 Sobic008G096300 Sobic008G096300 Sobic001G312801--Sobic008G096300 Sobic002G138200 Sobic002G138200 Sobic001G312801--Sobic002G138200 Sobic007G200300 Sobic007G200300 Sobic004G149000--Sobic007G200300 Sobic004G081000 Sobic004G081000 Sobic004G149000--Sobic004G081000 Sobic004G149000--Sobic009G147600 Sobic002G227100 Sobic002G227100 Sobic004G149000--Sobic002G227100 Sobic002G280001 Sobic002G280001 Sobic004G149000--Sobic002G280001 Sobic004G149000--Sobic002G320700 Sobic006G270300 Sobic006G270300 Sobic004G149000--Sobic006G270300 Sobic003G079600 Sobic003G079600 Sobic004G149000--Sobic003G079600 Sobic006G169600 Sobic006G169600 Sobic004G149000--Sobic006G169600 Sobic002G320700--Sobic004G202750 Sobic006G170800 Sobic006G170800 Sobic002G320700--Sobic006G170800 Sobic001G033200 Sobic001G033200 Sobic002G320700--Sobic001G033200 Sobic002G320700--Sobic001G104100 Sobic001G350300 Sobic001G350300 Sobic002G320700--Sobic001G350300 Sobic002G320700--Sobic001G028500 Sobic004G350600 Sobic004G350600 Sobic002G320700--Sobic004G350600 Sobic002G320700--Sobic001G071700 Sobic002G399000 Sobic002G399000 Sobic002G320700--Sobic002G399000 Sobic009G199900 Sobic009G199900 Sobic001G104100--Sobic009G199900 Sobic004G026000 Sobic004G026000 Sobic001G104100--Sobic004G026000 Sobic001G104100--Sobic003G106100 Sobic001G104100--Sobic004G314100 Sobic001G104100--Sobic001G028500 Sobic003G118500 Sobic003G118500 Sobic001G104100--Sobic003G118500 Sobic001G104100--Sobic002G320700 Sobic001G104100--Sobic002G399000 Sobic007G213500 Sobic007G213500 Sobic001G104100--Sobic007G213500 Sobic003G030200--Sobic001G312801 Sobic003G030200--Sobic001G490600 Sobic003G030200--Sobic009G147600 Sobic001G191400 Sobic001G191400 Sobic003G030200--Sobic001G191400 Sobic003G030200--Sobic001G368000 Sobic003G030200--Sobic003G106100 Sobic003G030200--Sobic007G213500 Sobic003G030200--Sobic007G017300 Sobic003G301950 Sobic003G301950 Sobic003G030200--Sobic003G301950 Sobic010G242000 Sobic010G242000 Sobic005G025400--Sobic010G242000 Sobic003G440500 Sobic003G440500 Sobic005G025400--Sobic003G440500 Sobic005G025400--Sobic002G399000 Sobic005G025400--Sobic006G170800 Sobic005G025400--Sobic001G350300 Sobic009G223900 Sobic009G223900 Sobic005G025400--Sobic009G223900 Sobic002G085600 Sobic002G085600 Sobic005G025400--Sobic002G085600 Sobic005G025400--Sobic004G202750 Sobic005G025400--Sobic001G350800 Sobic002G013600 Sobic002G013600 Sobic004G190800--Sobic002G013600 Sobic004G190800--Sobic001G312801 Sobic009G049100 Sobic009G049100 Sobic004G190800--Sobic009G049100 Sobic002G360701 Sobic002G360701 Sobic004G190800--Sobic002G360701 Sobic004G190800--Sobic007G061500 Sobic004G190800--Sobic001G350800 Sobic004G190800--Sobic004G314100 Sobic004G190800--Sobic004G288900 Sobic002G346250 Sobic002G346250 Sobic004G190800--Sobic002G346250
Octagon: transcription factors


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