Gene annotation
Transcriptome id Sobic.003G030200.1
Synonym ATHAL3, ATHAL3A, HAL3A, HAL3, Sb03g002830
Functional annotation phosphopantothenoylcysteine decarboxylase, putative, expressed
UniProt C5XLV1
Pfam PF02441
Panther DB PTHR14359
NCBI CDD KOG0672; Halotolerance protein HAL3 (contains flavoprotein domain)
KEGG Orthology K01598; PPCDC, phosphopantothenoylcysteine decarboxylase
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT3G18030 : HAL3-like protein A
RAP-DB (Rice) LOC_Os06g09910.2 : phosphopantothenoylcysteine decarboxylase, putative, expressed
MaizeGDB (Corn) Zm00025a023000
Brachypodium -
Barley HORVU3Hr1G027500.5 , HORVU3Hr1G027500.3 , HORVU3Hr1G027500.2
Wheat TraesCS3D02G143900 , TraesCS3B02G161400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G312801 - -
2 Sobic.001G490600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed -
3 Sobic.009G147600 pentatricopeptide, putative, expressed -
4 Sobic.001G191400 zinc finger C3HC4 type family protein, putative, expressed K10695: E3 ubiquitin-protein ligase RNF1/2
5 Sobic.001G368000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@annexin, putative, expressed -
6 Sobic.003G106100 expressed protein -
7 Sobic.007G213500 expressed protein -
8 Sobic.007G017300 endoglucanase, putative, expressed -
9 Sobic.003G301950 - -
10 Sobic.004G337700 expressed protein -
11 Sobic.005G204900 Lipase class 3 family protein (At)(PubMedID : 27208977)@lipase class 3 family protein, putative, expressed -
12 Sobic.009G184500 cysteine proteinase inhibitor precursor protein, putative, expressed -
13 Sobic.001G028500 expressed protein -
14 Sobic.005G155001 - -
15 Sobic.001G104100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ACT domain containing protein, expressed -
16 Sobic.004G026000 ankyrin repeat domain-containing protein, chloroplast precursor, putative, expressed -
17 Sobic.002G387000 expressed protein -
18 Sobic.009G004500 expressed protein -
19 Sobic.004G288900 protein kinase, putative, expressed -
20 Sobic.002G123700 - -


Gene co-expression network
sample Sobic003G030200 Sobic003G030200 Sobic001G312801 Sobic001G312801 Sobic003G030200--Sobic001G312801 Sobic001G490600 Sobic001G490600 Sobic003G030200--Sobic001G490600 Sobic009G147600 Sobic009G147600 Sobic003G030200--Sobic009G147600 Sobic001G191400 Sobic001G191400 Sobic003G030200--Sobic001G191400 Sobic001G368000 Sobic001G368000 Sobic003G030200--Sobic001G368000 Sobic003G106100 Sobic003G106100 Sobic003G030200--Sobic003G106100 Sobic007G213500 Sobic007G213500 Sobic003G030200--Sobic007G213500 Sobic007G017300 Sobic007G017300 Sobic003G030200--Sobic007G017300 Sobic003G301950 Sobic003G301950 Sobic003G030200--Sobic003G301950 Sobic004G288900 Sobic004G288900 Sobic001G312801--Sobic004G288900 Sobic001G312801--Sobic001G490600 Sobic001G312801--Sobic001G368000 Sobic009G184500 Sobic009G184500 Sobic001G312801--Sobic009G184500 Sobic004G190800 Sobic004G190800 Sobic001G312801--Sobic004G190800 Sobic001G312801--Sobic007G017300 Sobic009G170301 Sobic009G170301 Sobic001G312801--Sobic009G170301 Sobic008G096300 Sobic008G096300 Sobic001G312801--Sobic008G096300 Sobic002G138200 Sobic002G138200 Sobic001G312801--Sobic002G138200 Sobic001G490600--Sobic009G184500 Sobic001G490600--Sobic001G368000 Sobic001G490600--Sobic007G017300 Sobic009G004500 Sobic009G004500 Sobic001G490600--Sobic009G004500 Sobic001G490600--Sobic001G312801 Sobic008G185000 Sobic008G185000 Sobic001G490600--Sobic008G185000 Sobic001G490600--Sobic009G170301 Sobic001G483200 Sobic001G483200 Sobic001G490600--Sobic001G483200 Sobic005G155001 Sobic005G155001 Sobic001G490600--Sobic005G155001 Sobic004G202750 Sobic004G202750 Sobic009G147600--Sobic004G202750 Sobic001G028500 Sobic001G028500 Sobic009G147600--Sobic001G028500 Sobic009G147600--Sobic001G312801 Sobic004G149000 Sobic004G149000 Sobic009G147600--Sobic004G149000 Sobic002G320700 Sobic002G320700 Sobic009G147600--Sobic002G320700 Sobic001G104100 Sobic001G104100 Sobic009G147600--Sobic001G104100 Sobic009G147600--Sobic003G030200 Sobic005G025400 Sobic005G025400 Sobic009G147600--Sobic005G025400 Sobic009G147600--Sobic004G190800 Sobic004G337700 Sobic004G337700 Sobic001G191400--Sobic004G337700 Sobic007G090406 Sobic007G090406 Sobic001G191400--Sobic007G090406 Sobic001G191400--Sobic005G155001 Sobic009G114900 Sobic009G114900 Sobic001G191400--Sobic009G114900 Sobic010G021401 Sobic010G021401 Sobic001G191400--Sobic010G021401 Sobic001G191400--Sobic003G030200 Sobic005G204900 Sobic005G204900 Sobic001G191400--Sobic005G204900 Sobic001G341900 Sobic001G341900 Sobic001G191400--Sobic001G341900 Sobic001G191400--Sobic001G490600 Sobic001G368000--Sobic007G017300 Sobic001G368000--Sobic009G004500 Sobic001G368000--Sobic001G483200 Sobic007G061500 Sobic007G061500 Sobic001G368000--Sobic007G061500 Sobic001G368000--Sobic001G490600 Sobic001G368000--Sobic005G155001 Sobic001G468200 Sobic001G468200 Sobic001G368000--Sobic001G468200 Sobic001G368000--Sobic007G213500 Sobic001G368000--Sobic009G184500 Sobic004G314100 Sobic004G314100 Sobic003G106100--Sobic004G314100 Sobic003G106100--Sobic001G028500 Sobic004G231501 Sobic004G231501 Sobic003G106100--Sobic004G231501 Sobic003G106100--Sobic007G061500 Sobic003G106100--Sobic001G104100 Sobic003G106100--Sobic007G213500 Sobic009G199900 Sobic009G199900 Sobic003G106100--Sobic009G199900 Sobic001G060200 Sobic001G060200 Sobic003G106100--Sobic001G060200 Sobic004G026000 Sobic004G026000 Sobic003G106100--Sobic004G026000 Sobic007G213500--Sobic004G026000 Sobic006G121200 Sobic006G121200 Sobic007G213500--Sobic006G121200 Sobic007G213500--Sobic004G314100 Sobic007G213500--Sobic007G017300 Sobic007G213500--Sobic001G483200 Sobic007G213500--Sobic001G368000 Sobic007G213500--Sobic003G106100 Sobic007G213500--Sobic007G061500 Sobic007G213500--Sobic001G104100 Sobic007G017300--Sobic001G368000 Sobic007G017300--Sobic001G483200 Sobic007G017300--Sobic009G004500 Sobic007G017300--Sobic005G155001 Sobic007G017300--Sobic007G061500 Sobic003G093500 Sobic003G093500 Sobic007G017300--Sobic003G093500 Sobic007G017300--Sobic007G213500 Sobic007G017300--Sobic001G028500 Sobic007G017300--Sobic001G468200 Sobic001G082700 Sobic001G082700 Sobic003G301950--Sobic001G082700 Sobic002G387000 Sobic002G387000 Sobic003G301950--Sobic002G387000 Sobic003G301950--Sobic003G030200 Sobic002G197400 Sobic002G197400 Sobic003G301950--Sobic002G197400 Sobic003G301950--Sobic009G147600 Sobic007G189900 Sobic007G189900 Sobic003G301950--Sobic007G189900 Sobic004G091300 Sobic004G091300 Sobic003G301950--Sobic004G091300 Sobic003G301950--Sobic001G312801 Sobic003G276400 Sobic003G276400 Sobic003G301950--Sobic003G276400
Octagon: transcription factors


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