Gene annotation
Transcriptome id Sobic.004G026000.1
Synonym Sb04g002300, EMB139, EMB506
Functional annotation ankyrin repeat domain-containing protein, chloroplast precursor, putative, expressed
UniProt C5XTR0
Pfam PF12796
Panther DB PTHR24198 PTHR24198:SF94
NCBI CDD KOG4214; Myotrophin and similar proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G40160 : Ankyrin repeat family protein
RAP-DB (Rice) LOC_Os06g13000.1 : ankyrin repeat domain-containing protein, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a034971
Brachypodium KQK18810
Barley HORVU7Hr1G039330.6 , HORVU7Hr1G039330.7 , HORVU7Hr1G039330.5 , HORVU7Hr1G039330.4 , HORVU7Hr1G039330.3 , HORVU7Hr1G039330.2 , HORVU7Hr1G039330.1
Wheat TraesCS7A02G193000 , TraesCS7A02G193000 , TraesCS7D02G194200 , TraesCS7B02G098300 , TraesCS4B02G183600
Populus -


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cDNA sequences
Sobic.004G026000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G310400 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
2 Sobic.007G213500 expressed protein -
3 Sobic.004G314100 GS9(Ortholog in rice:Zhao et al.(2018))(PubMedID : 31659890)@expressed protein -
4 Sobic.001G104100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ACT domain containing protein, expressed -
5 Sobic.001G096200 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
6 Sobic.006G121200 high affinity nitrate transporter, putative, expressed -
7 Sobic.003G106100 expressed protein -
8 Sobic.004G231501 - -
9 Sobic.001G028500 expressed protein -
10 Sobic.003G118500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
11 Sobic.008G160100 - -
12 Sobic.007G061500 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
13 Sobic.009G199900 osFTL10 FT-Like10 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
14 Sobic.004G144300 - -
15 Sobic.006G243000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCB4, putative, expressed -
16 Sobic.007G017300 endoglucanase, putative, expressed -
17 Sobic.004G202750 - -
18 Sobic.001G520000 auxin efflux carrier component, putative, expressed -
19 Sobic.001G312801 - -
20 Sobic.003G155800 dnaJ homolog subfamily B member 11 precursor, putative, expressed K09517: DnaJ homolog subfamily B member 11


Gene co-expression network
sample Sobic004G026000 Sobic004G026000 Sobic004G310400 Sobic004G310400 Sobic004G026000--Sobic004G310400 Sobic007G213500 Sobic007G213500 Sobic004G026000--Sobic007G213500 Sobic004G314100 Sobic004G314100 Sobic004G026000--Sobic004G314100 Sobic001G104100 Sobic001G104100 Sobic004G026000--Sobic001G104100 Sobic001G096200 Sobic001G096200 Sobic004G026000--Sobic001G096200 Sobic006G121200 Sobic006G121200 Sobic004G026000--Sobic006G121200 Sobic003G106100 Sobic003G106100 Sobic004G026000--Sobic003G106100 Sobic004G231501 Sobic004G231501 Sobic004G026000--Sobic004G231501 Sobic001G028500 Sobic001G028500 Sobic004G026000--Sobic001G028500 Sobic004G310400--Sobic004G026000 Sobic004G144300 Sobic004G144300 Sobic004G310400--Sobic004G144300 Sobic004G310400--Sobic001G096200 Sobic004G310400--Sobic004G314100 Sobic003G118500 Sobic003G118500 Sobic004G310400--Sobic003G118500 Sobic004G310400--Sobic001G104100 Sobic004G310400--Sobic006G121200 Sobic004G310400--Sobic007G213500 Sobic008G160100 Sobic008G160100 Sobic004G310400--Sobic008G160100 Sobic007G213500--Sobic004G026000 Sobic007G213500--Sobic006G121200 Sobic007G213500--Sobic004G314100 Sobic007G017300 Sobic007G017300 Sobic007G213500--Sobic007G017300 Sobic001G483200 Sobic001G483200 Sobic007G213500--Sobic001G483200 Sobic001G368000 Sobic001G368000 Sobic007G213500--Sobic001G368000 Sobic007G213500--Sobic003G106100 Sobic007G061500 Sobic007G061500 Sobic007G213500--Sobic007G061500 Sobic007G213500--Sobic001G104100 Sobic004G314100--Sobic007G061500 Sobic004G314100--Sobic003G106100 Sobic004G314100--Sobic004G231501 Sobic004G314100--Sobic001G028500 Sobic004G314100--Sobic004G026000 Sobic004G314100--Sobic007G213500 Sobic004G314100--Sobic004G310400 Sobic004G314100--Sobic001G104100 Sobic004G314100--Sobic007G017300 Sobic009G199900 Sobic009G199900 Sobic001G104100--Sobic009G199900 Sobic001G104100--Sobic004G026000 Sobic001G104100--Sobic003G106100 Sobic001G104100--Sobic004G314100 Sobic001G104100--Sobic001G028500 Sobic001G104100--Sobic003G118500 Sobic002G320700 Sobic002G320700 Sobic001G104100--Sobic002G320700 Sobic002G399000 Sobic002G399000 Sobic001G104100--Sobic002G399000 Sobic001G104100--Sobic007G213500 Sobic001G096200--Sobic004G310400 Sobic001G096200--Sobic004G026000 Sobic001G520000 Sobic001G520000 Sobic001G096200--Sobic001G520000 Sobic001G096200--Sobic004G314100 Sobic003G155800 Sobic003G155800 Sobic001G096200--Sobic003G155800 Sobic006G243000 Sobic006G243000 Sobic001G096200--Sobic006G243000 Sobic001G096200--Sobic003G118500 Sobic003G253700 Sobic003G253700 Sobic001G096200--Sobic003G253700 Sobic001G096200--Sobic004G231501 Sobic006G121200--Sobic007G213500 Sobic006G121200--Sobic004G026000 Sobic006G121200--Sobic004G314100 Sobic006G121200--Sobic004G310400 Sobic001G468200 Sobic001G468200 Sobic006G121200--Sobic001G468200 Sobic001G071700 Sobic001G071700 Sobic006G121200--Sobic001G071700 Sobic009G235100 Sobic009G235100 Sobic006G121200--Sobic009G235100 Sobic002G123700 Sobic002G123700 Sobic006G121200--Sobic002G123700 Sobic006G121200--Sobic007G061500 Sobic003G106100--Sobic004G314100 Sobic003G106100--Sobic001G028500 Sobic003G106100--Sobic004G231501 Sobic003G106100--Sobic007G061500 Sobic003G106100--Sobic001G104100 Sobic003G106100--Sobic007G213500 Sobic003G106100--Sobic009G199900 Sobic001G060200 Sobic001G060200 Sobic003G106100--Sobic001G060200 Sobic003G106100--Sobic004G026000 Sobic004G231501--Sobic001G028500 Sobic004G231501--Sobic007G061500 Sobic004G231501--Sobic004G314100 Sobic004G231501--Sobic003G106100 Sobic009G004500 Sobic009G004500 Sobic004G231501--Sobic009G004500 Sobic004G231501--Sobic007G017300 Sobic004G202750 Sobic004G202750 Sobic004G231501--Sobic004G202750 Sobic004G231501--Sobic001G483200 Sobic004G231501--Sobic001G368000 Sobic001G028500--Sobic004G231501 Sobic001G028500--Sobic007G061500 Sobic001G028500--Sobic009G004500 Sobic001G028500--Sobic003G106100 Sobic001G028500--Sobic004G202750 Sobic001G028500--Sobic004G314100 Sobic001G028500--Sobic007G017300 Sobic001G028500--Sobic001G483200 Sobic001G028500--Sobic001G060200
Octagon: transcription factors


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