Gene annotation
Transcriptome id Sobic.001G104100.2,Sobic.001G104100.1
Synonym Sb01g009300
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
ACT domain containing protein, expressed
UniProt C5WLZ8
Pfam PF01842
Panther DB PTHR31096 PTHR31096:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016597; amino acid binding GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT5G25320 : ACT-like superfamily protein
RAP-DB (Rice) LOC_Os03g51990.1 : ACT domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008005 , Zm00025a016879
Brachypodium KQK13394
Barley HORVU4Hr1G010150.9 , HORVU4Hr1G010150.8 , HORVU4Hr1G010150.5 , HORVU4Hr1G010150.4 , HORVU4Hr1G010150.7 , HORVU4Hr1G010150.6 , HORVU4Hr1G010150.1 , HORVU4Hr1G010150.3 , HORVU4Hr1G010150.2
Wheat TraesCS4A02G254300 , TraesCS4D02G059900 , TraesCS4B02G060200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G199900 osFTL10 FT-Like10 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
2 Sobic.004G026000 ankyrin repeat domain-containing protein, chloroplast precursor, putative, expressed -
3 Sobic.003G106100 expressed protein -
4 Sobic.004G314100 GS9(Ortholog in rice:Zhao et al.(2018))(PubMedID : 31659890)@expressed protein -
5 Sobic.001G028500 expressed protein -
6 Sobic.003G118500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
7 Sobic.002G320700 expressed protein -
8 Sobic.002G399000 expressed protein -
9 Sobic.007G213500 expressed protein -
10 Sobic.004G202750 - -
11 Sobic.004G350600 AMP-binding domain containing protein, expressed -
12 Sobic.004G310400 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
13 Sobic.001G350300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.004G305300 - -
15 Sobic.004G231501 - -
16 Sobic.006G170800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
17 Sobic.001G191300 bile acid sodium symporter family protein, putative, expressed K03453: bile acid:Na+ symporter, BASS family
18 Sobic.004G144300 - -
19 Sobic.003G155800 dnaJ homolog subfamily B member 11 precursor, putative, expressed K09517: DnaJ homolog subfamily B member 11
20 Sobic.001G350800 - -


Gene co-expression network
sample Sobic001G104100 Sobic001G104100 Sobic009G199900 Sobic009G199900 Sobic001G104100--Sobic009G199900 Sobic004G026000 Sobic004G026000 Sobic001G104100--Sobic004G026000 Sobic003G106100 Sobic003G106100 Sobic001G104100--Sobic003G106100 Sobic004G314100 Sobic004G314100 Sobic001G104100--Sobic004G314100 Sobic001G028500 Sobic001G028500 Sobic001G104100--Sobic001G028500 Sobic003G118500 Sobic003G118500 Sobic001G104100--Sobic003G118500 Sobic002G320700 Sobic002G320700 Sobic001G104100--Sobic002G320700 Sobic002G399000 Sobic002G399000 Sobic001G104100--Sobic002G399000 Sobic007G213500 Sobic007G213500 Sobic001G104100--Sobic007G213500 Sobic009G199900--Sobic001G104100 Sobic009G199900--Sobic001G028500 Sobic009G199900--Sobic003G106100 Sobic004G202750 Sobic004G202750 Sobic009G199900--Sobic004G202750 Sobic004G350600 Sobic004G350600 Sobic009G199900--Sobic004G350600 Sobic004G231501 Sobic004G231501 Sobic009G199900--Sobic004G231501 Sobic009G199900--Sobic004G026000 Sobic003G155800 Sobic003G155800 Sobic009G199900--Sobic003G155800 Sobic009G199900--Sobic004G314100 Sobic004G310400 Sobic004G310400 Sobic004G026000--Sobic004G310400 Sobic004G026000--Sobic007G213500 Sobic004G026000--Sobic004G314100 Sobic004G026000--Sobic001G104100 Sobic001G096200 Sobic001G096200 Sobic004G026000--Sobic001G096200 Sobic006G121200 Sobic006G121200 Sobic004G026000--Sobic006G121200 Sobic004G026000--Sobic003G106100 Sobic004G026000--Sobic004G231501 Sobic004G026000--Sobic001G028500 Sobic003G106100--Sobic004G314100 Sobic003G106100--Sobic001G028500 Sobic003G106100--Sobic004G231501 Sobic007G061500 Sobic007G061500 Sobic003G106100--Sobic007G061500 Sobic003G106100--Sobic001G104100 Sobic003G106100--Sobic007G213500 Sobic003G106100--Sobic009G199900 Sobic001G060200 Sobic001G060200 Sobic003G106100--Sobic001G060200 Sobic003G106100--Sobic004G026000 Sobic004G314100--Sobic007G061500 Sobic004G314100--Sobic003G106100 Sobic004G314100--Sobic004G231501 Sobic004G314100--Sobic001G028500 Sobic004G314100--Sobic004G026000 Sobic004G314100--Sobic007G213500 Sobic004G314100--Sobic004G310400 Sobic004G314100--Sobic001G104100 Sobic007G017300 Sobic007G017300 Sobic004G314100--Sobic007G017300 Sobic001G028500--Sobic004G231501 Sobic001G028500--Sobic007G061500 Sobic009G004500 Sobic009G004500 Sobic001G028500--Sobic009G004500 Sobic001G028500--Sobic003G106100 Sobic001G028500--Sobic004G202750 Sobic001G028500--Sobic004G314100 Sobic001G028500--Sobic007G017300 Sobic001G483200 Sobic001G483200 Sobic001G028500--Sobic001G483200 Sobic001G028500--Sobic001G060200 Sobic004G305300 Sobic004G305300 Sobic003G118500--Sobic004G305300 Sobic003G118500--Sobic001G104100 Sobic001G191300 Sobic001G191300 Sobic003G118500--Sobic001G191300 Sobic003G118500--Sobic004G310400 Sobic001G350300 Sobic001G350300 Sobic003G118500--Sobic001G350300 Sobic003G118500--Sobic004G026000 Sobic003G118500--Sobic001G096200 Sobic007G077466 Sobic007G077466 Sobic003G118500--Sobic007G077466 Sobic003G362800 Sobic003G362800 Sobic003G118500--Sobic003G362800 Sobic002G320700--Sobic004G202750 Sobic006G170800 Sobic006G170800 Sobic002G320700--Sobic006G170800 Sobic001G033200 Sobic001G033200 Sobic002G320700--Sobic001G033200 Sobic002G320700--Sobic001G104100 Sobic002G320700--Sobic001G350300 Sobic002G320700--Sobic001G028500 Sobic002G320700--Sobic004G350600 Sobic001G071700 Sobic001G071700 Sobic002G320700--Sobic001G071700 Sobic002G320700--Sobic002G399000 Sobic002G399000--Sobic001G350300 Sobic002G399000--Sobic004G350600 Sobic002G399000--Sobic001G104100 Sobic002G399000--Sobic001G191300 Sobic002G399000--Sobic006G170800 Sobic002G399000--Sobic004G202750 Sobic002G399000--Sobic004G305300 Sobic002G399000--Sobic003G118500 Sobic005G025400 Sobic005G025400 Sobic002G399000--Sobic005G025400 Sobic007G213500--Sobic004G026000 Sobic007G213500--Sobic006G121200 Sobic007G213500--Sobic004G314100 Sobic007G213500--Sobic007G017300 Sobic007G213500--Sobic001G483200 Sobic001G368000 Sobic001G368000 Sobic007G213500--Sobic001G368000 Sobic007G213500--Sobic003G106100 Sobic007G213500--Sobic007G061500 Sobic007G213500--Sobic001G104100
Octagon: transcription factors


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