Gene annotation
Transcriptome id Sobic.001G350300.3,Sobic.001G350300.1,Sobic.001G350300.2,Sobic.001G350300.4
Synonym Sb01g033530
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1B6QMU3 , A0A1Z5S9G4 , A0A1Z5S955 , A0A1Z5S990
Pfam PF00010
Panther DB PTHR13935 PTHR13935:SF52
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT4G20970 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os01g01840.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G170800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
2 Sobic.004G305300 - -
3 Sobic.002G399000 expressed protein -
4 Sobic.004G350600 AMP-binding domain containing protein, expressed -
5 Sobic.001G191300 bile acid sodium symporter family protein, putative, expressed K03453: bile acid:Na+ symporter, BASS family
6 Sobic.001G104100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ACT domain containing protein, expressed -
7 Sobic.002G320700 expressed protein -
8 Sobic.003G118500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
9 Sobic.001G113400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@seed maturation protein PM41, putative, expressed -
10 Sobic.002G085600 - -
11 Sobic.002G001500 pentatricopeptide containing protein, putative, expressed -
12 Sobic.007G077466 - -
13 Sobic.005G025400 CAMK_CAMK_like.42 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
14 Sobic.004G202750 - -
15 Sobic.009G223900 protein binding protein, putative, expressed -
16 Sobic.007G174200 carrier, putative, expressed -
17 Sobic.010G242000 phytosulfokine receptor precursor, putative, expressed -
18 Sobic.009G199900 osFTL10 FT-Like10 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
19 Sobic.009G149600 transmembrane protein 18, putative, expressed -
20 Sobic.001G028500 expressed protein -


Gene co-expression network
sample Sobic001G350300 Sobic001G350300 Sobic006G170800 Sobic006G170800 Sobic001G350300--Sobic006G170800 Sobic004G305300 Sobic004G305300 Sobic001G350300--Sobic004G305300 Sobic002G399000 Sobic002G399000 Sobic001G350300--Sobic002G399000 Sobic004G350600 Sobic004G350600 Sobic001G350300--Sobic004G350600 Sobic001G191300 Sobic001G191300 Sobic001G350300--Sobic001G191300 Sobic001G104100 Sobic001G104100 Sobic001G350300--Sobic001G104100 Sobic002G320700 Sobic002G320700 Sobic001G350300--Sobic002G320700 Sobic003G118500 Sobic003G118500 Sobic001G350300--Sobic003G118500 Sobic001G113400 Sobic001G113400 Sobic001G350300--Sobic001G113400 Sobic006G170800--Sobic001G350300 Sobic006G170800--Sobic002G320700 Sobic006G170800--Sobic004G305300 Sobic006G170800--Sobic002G399000 Sobic010G242000 Sobic010G242000 Sobic006G170800--Sobic010G242000 Sobic006G170800--Sobic004G350600 Sobic004G202750 Sobic004G202750 Sobic006G170800--Sobic004G202750 Sobic006G170800--Sobic001G104100 Sobic005G025400 Sobic005G025400 Sobic006G170800--Sobic005G025400 Sobic004G305300--Sobic001G350300 Sobic004G305300--Sobic006G170800 Sobic004G305300--Sobic003G118500 Sobic004G305300--Sobic001G191300 Sobic004G305300--Sobic001G104100 Sobic002G085600 Sobic002G085600 Sobic004G305300--Sobic002G085600 Sobic004G305300--Sobic004G350600 Sobic004G305300--Sobic002G399000 Sobic007G077466 Sobic007G077466 Sobic004G305300--Sobic007G077466 Sobic002G399000--Sobic001G350300 Sobic002G399000--Sobic004G350600 Sobic002G399000--Sobic001G104100 Sobic002G399000--Sobic001G191300 Sobic002G399000--Sobic006G170800 Sobic002G399000--Sobic004G202750 Sobic002G399000--Sobic004G305300 Sobic002G399000--Sobic003G118500 Sobic002G399000--Sobic005G025400 Sobic004G350600--Sobic001G350300 Sobic004G350600--Sobic002G399000 Sobic004G350600--Sobic001G104100 Sobic001G028500 Sobic001G028500 Sobic004G350600--Sobic001G028500 Sobic004G350600--Sobic006G170800 Sobic009G199900 Sobic009G199900 Sobic004G350600--Sobic009G199900 Sobic004G350600--Sobic004G305300 Sobic004G350600--Sobic002G320700 Sobic004G350600--Sobic003G118500 Sobic001G191300--Sobic007G077466 Sobic001G191300--Sobic003G118500 Sobic001G191300--Sobic001G350300 Sobic001G191300--Sobic004G305300 Sobic001G191300--Sobic002G399000 Sobic003G362800 Sobic003G362800 Sobic001G191300--Sobic003G362800 Sobic001G191300--Sobic002G085600 Sobic002G001500 Sobic002G001500 Sobic001G191300--Sobic002G001500 Sobic002G110600 Sobic002G110600 Sobic001G191300--Sobic002G110600 Sobic001G104100--Sobic009G199900 Sobic004G026000 Sobic004G026000 Sobic001G104100--Sobic004G026000 Sobic003G106100 Sobic003G106100 Sobic001G104100--Sobic003G106100 Sobic004G314100 Sobic004G314100 Sobic001G104100--Sobic004G314100 Sobic001G104100--Sobic001G028500 Sobic001G104100--Sobic003G118500 Sobic001G104100--Sobic002G320700 Sobic001G104100--Sobic002G399000 Sobic007G213500 Sobic007G213500 Sobic001G104100--Sobic007G213500 Sobic002G320700--Sobic004G202750 Sobic002G320700--Sobic006G170800 Sobic001G033200 Sobic001G033200 Sobic002G320700--Sobic001G033200 Sobic002G320700--Sobic001G104100 Sobic002G320700--Sobic001G350300 Sobic002G320700--Sobic001G028500 Sobic002G320700--Sobic004G350600 Sobic001G071700 Sobic001G071700 Sobic002G320700--Sobic001G071700 Sobic002G320700--Sobic002G399000 Sobic003G118500--Sobic004G305300 Sobic003G118500--Sobic001G104100 Sobic003G118500--Sobic001G191300 Sobic004G310400 Sobic004G310400 Sobic003G118500--Sobic004G310400 Sobic003G118500--Sobic001G350300 Sobic003G118500--Sobic004G026000 Sobic001G096200 Sobic001G096200 Sobic003G118500--Sobic001G096200 Sobic003G118500--Sobic007G077466 Sobic003G118500--Sobic003G362800 Sobic001G113400--Sobic003G362800 Sobic001G113400--Sobic002G001500 Sobic001G113400--Sobic002G085600 Sobic009G208000 Sobic009G208000 Sobic001G113400--Sobic009G208000 Sobic004G144300 Sobic004G144300 Sobic001G113400--Sobic004G144300 Sobic003G155800 Sobic003G155800 Sobic001G113400--Sobic003G155800 Sobic009G223900 Sobic009G223900 Sobic001G113400--Sobic009G223900 Sobic004G181000 Sobic004G181000 Sobic001G113400--Sobic004G181000 Sobic009G192933 Sobic009G192933 Sobic001G113400--Sobic009G192933
Octagon: transcription factors


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