Gene annotation
Transcriptome id Sobic.004G350600.1
Synonym Sb04g037750
Functional annotation AMP-binding domain containing protein, expressed
UniProt C5XW17
Pfam PF00501
Panther DB PTHR24096 PTHR24096:SF233
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT1G20510 : OPC-8:0 CoA ligase1
RAP-DB (Rice) LOC_Os03g04000.1 : AMP-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a032755
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G350300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.002G399000 expressed protein -
3 Sobic.001G104100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ACT domain containing protein, expressed -
4 Sobic.001G028500 expressed protein -
5 Sobic.006G170800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
6 Sobic.009G199900 osFTL10 FT-Like10 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
7 Sobic.004G305300 - -
8 Sobic.002G320700 expressed protein -
9 Sobic.003G118500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
10 Sobic.001G191300 bile acid sodium symporter family protein, putative, expressed K03453: bile acid:Na+ symporter, BASS family
11 Sobic.004G231501 - -
12 Sobic.003G155800 dnaJ homolog subfamily B member 11 precursor, putative, expressed K09517: DnaJ homolog subfamily B member 11
13 Sobic.003G106100 expressed protein -
14 Sobic.004G202750 - -
15 Sobic.006G169600 expressed protein -
16 Sobic.009G223900 protein binding protein, putative, expressed -
17 Sobic.005G063600 protein kinase domain containing protein, expressed K04733: interleukin-1 receptor-associated kinase 4
18 Sobic.002G001500 pentatricopeptide containing protein, putative, expressed -
19 Sobic.004G314100 GS9(Ortholog in rice:Zhao et al.(2018))(PubMedID : 31659890)@expressed protein -
20 Sobic.001G096200 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10


Gene co-expression network
sample Sobic004G350600 Sobic004G350600 Sobic001G350300 Sobic001G350300 Sobic004G350600--Sobic001G350300 Sobic002G399000 Sobic002G399000 Sobic004G350600--Sobic002G399000 Sobic001G104100 Sobic001G104100 Sobic004G350600--Sobic001G104100 Sobic001G028500 Sobic001G028500 Sobic004G350600--Sobic001G028500 Sobic006G170800 Sobic006G170800 Sobic004G350600--Sobic006G170800 Sobic009G199900 Sobic009G199900 Sobic004G350600--Sobic009G199900 Sobic004G305300 Sobic004G305300 Sobic004G350600--Sobic004G305300 Sobic002G320700 Sobic002G320700 Sobic004G350600--Sobic002G320700 Sobic003G118500 Sobic003G118500 Sobic004G350600--Sobic003G118500 Sobic001G350300--Sobic006G170800 Sobic001G350300--Sobic004G305300 Sobic001G350300--Sobic002G399000 Sobic001G350300--Sobic004G350600 Sobic001G191300 Sobic001G191300 Sobic001G350300--Sobic001G191300 Sobic001G350300--Sobic001G104100 Sobic001G350300--Sobic002G320700 Sobic001G350300--Sobic003G118500 Sobic001G113400 Sobic001G113400 Sobic001G350300--Sobic001G113400 Sobic002G399000--Sobic001G350300 Sobic002G399000--Sobic004G350600 Sobic002G399000--Sobic001G104100 Sobic002G399000--Sobic001G191300 Sobic002G399000--Sobic006G170800 Sobic004G202750 Sobic004G202750 Sobic002G399000--Sobic004G202750 Sobic002G399000--Sobic004G305300 Sobic002G399000--Sobic003G118500 Sobic005G025400 Sobic005G025400 Sobic002G399000--Sobic005G025400 Sobic001G104100--Sobic009G199900 Sobic004G026000 Sobic004G026000 Sobic001G104100--Sobic004G026000 Sobic003G106100 Sobic003G106100 Sobic001G104100--Sobic003G106100 Sobic004G314100 Sobic004G314100 Sobic001G104100--Sobic004G314100 Sobic001G104100--Sobic001G028500 Sobic001G104100--Sobic003G118500 Sobic001G104100--Sobic002G320700 Sobic001G104100--Sobic002G399000 Sobic007G213500 Sobic007G213500 Sobic001G104100--Sobic007G213500 Sobic004G231501 Sobic004G231501 Sobic001G028500--Sobic004G231501 Sobic007G061500 Sobic007G061500 Sobic001G028500--Sobic007G061500 Sobic009G004500 Sobic009G004500 Sobic001G028500--Sobic009G004500 Sobic001G028500--Sobic003G106100 Sobic001G028500--Sobic004G202750 Sobic001G028500--Sobic004G314100 Sobic007G017300 Sobic007G017300 Sobic001G028500--Sobic007G017300 Sobic001G483200 Sobic001G483200 Sobic001G028500--Sobic001G483200 Sobic001G060200 Sobic001G060200 Sobic001G028500--Sobic001G060200 Sobic006G170800--Sobic001G350300 Sobic006G170800--Sobic002G320700 Sobic006G170800--Sobic004G305300 Sobic006G170800--Sobic002G399000 Sobic010G242000 Sobic010G242000 Sobic006G170800--Sobic010G242000 Sobic006G170800--Sobic004G350600 Sobic006G170800--Sobic004G202750 Sobic006G170800--Sobic001G104100 Sobic006G170800--Sobic005G025400 Sobic009G199900--Sobic001G104100 Sobic009G199900--Sobic001G028500 Sobic009G199900--Sobic003G106100 Sobic009G199900--Sobic004G202750 Sobic009G199900--Sobic004G350600 Sobic009G199900--Sobic004G231501 Sobic009G199900--Sobic004G026000 Sobic003G155800 Sobic003G155800 Sobic009G199900--Sobic003G155800 Sobic009G199900--Sobic004G314100 Sobic004G305300--Sobic001G350300 Sobic004G305300--Sobic006G170800 Sobic004G305300--Sobic003G118500 Sobic004G305300--Sobic001G191300 Sobic004G305300--Sobic001G104100 Sobic002G085600 Sobic002G085600 Sobic004G305300--Sobic002G085600 Sobic004G305300--Sobic004G350600 Sobic004G305300--Sobic002G399000 Sobic007G077466 Sobic007G077466 Sobic004G305300--Sobic007G077466 Sobic002G320700--Sobic004G202750 Sobic002G320700--Sobic006G170800 Sobic001G033200 Sobic001G033200 Sobic002G320700--Sobic001G033200 Sobic002G320700--Sobic001G104100 Sobic002G320700--Sobic001G350300 Sobic002G320700--Sobic001G028500 Sobic002G320700--Sobic004G350600 Sobic001G071700 Sobic001G071700 Sobic002G320700--Sobic001G071700 Sobic002G320700--Sobic002G399000 Sobic003G118500--Sobic004G305300 Sobic003G118500--Sobic001G104100 Sobic003G118500--Sobic001G191300 Sobic004G310400 Sobic004G310400 Sobic003G118500--Sobic004G310400 Sobic003G118500--Sobic001G350300 Sobic003G118500--Sobic004G026000 Sobic001G096200 Sobic001G096200 Sobic003G118500--Sobic001G096200 Sobic003G118500--Sobic007G077466 Sobic003G362800 Sobic003G362800 Sobic003G118500--Sobic003G362800
Octagon: transcription factors


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