Gene annotation
Transcriptome id Sobic.004G305300.1
Synonym
Functional annotation -
UniProt A0A194YSC5
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a022177
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G350300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.006G170800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
3 Sobic.003G118500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
4 Sobic.001G191300 bile acid sodium symporter family protein, putative, expressed K03453: bile acid:Na+ symporter, BASS family
5 Sobic.001G104100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ACT domain containing protein, expressed -
6 Sobic.002G085600 - -
7 Sobic.004G350600 AMP-binding domain containing protein, expressed -
8 Sobic.002G399000 expressed protein -
9 Sobic.007G077466 - -
10 Sobic.002G320700 expressed protein -
11 Sobic.001G113400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@seed maturation protein PM41, putative, expressed -
12 Sobic.002G001500 pentatricopeptide containing protein, putative, expressed -
13 Sobic.004G144300 - -
14 Sobic.003G362800 - -
15 Sobic.009G192933 - -
16 Sobic.003G106100 expressed protein -
17 Sobic.009G147600 pentatricopeptide, putative, expressed -
18 Sobic.004G310400 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
19 Sobic.007G174200 carrier, putative, expressed -
20 Sobic.002G227100 cyclin-dependent kinase inhibitor, putative, expressed -


Gene co-expression network
sample Sobic004G305300 Sobic004G305300 Sobic001G350300 Sobic001G350300 Sobic004G305300--Sobic001G350300 Sobic006G170800 Sobic006G170800 Sobic004G305300--Sobic006G170800 Sobic003G118500 Sobic003G118500 Sobic004G305300--Sobic003G118500 Sobic001G191300 Sobic001G191300 Sobic004G305300--Sobic001G191300 Sobic001G104100 Sobic001G104100 Sobic004G305300--Sobic001G104100 Sobic002G085600 Sobic002G085600 Sobic004G305300--Sobic002G085600 Sobic004G350600 Sobic004G350600 Sobic004G305300--Sobic004G350600 Sobic002G399000 Sobic002G399000 Sobic004G305300--Sobic002G399000 Sobic007G077466 Sobic007G077466 Sobic004G305300--Sobic007G077466 Sobic001G350300--Sobic006G170800 Sobic001G350300--Sobic004G305300 Sobic001G350300--Sobic002G399000 Sobic001G350300--Sobic004G350600 Sobic001G350300--Sobic001G191300 Sobic001G350300--Sobic001G104100 Sobic002G320700 Sobic002G320700 Sobic001G350300--Sobic002G320700 Sobic001G350300--Sobic003G118500 Sobic001G113400 Sobic001G113400 Sobic001G350300--Sobic001G113400 Sobic006G170800--Sobic001G350300 Sobic006G170800--Sobic002G320700 Sobic006G170800--Sobic004G305300 Sobic006G170800--Sobic002G399000 Sobic010G242000 Sobic010G242000 Sobic006G170800--Sobic010G242000 Sobic006G170800--Sobic004G350600 Sobic004G202750 Sobic004G202750 Sobic006G170800--Sobic004G202750 Sobic006G170800--Sobic001G104100 Sobic005G025400 Sobic005G025400 Sobic006G170800--Sobic005G025400 Sobic003G118500--Sobic004G305300 Sobic003G118500--Sobic001G104100 Sobic003G118500--Sobic001G191300 Sobic004G310400 Sobic004G310400 Sobic003G118500--Sobic004G310400 Sobic003G118500--Sobic001G350300 Sobic004G026000 Sobic004G026000 Sobic003G118500--Sobic004G026000 Sobic001G096200 Sobic001G096200 Sobic003G118500--Sobic001G096200 Sobic003G118500--Sobic007G077466 Sobic003G362800 Sobic003G362800 Sobic003G118500--Sobic003G362800 Sobic001G191300--Sobic007G077466 Sobic001G191300--Sobic003G118500 Sobic001G191300--Sobic001G350300 Sobic001G191300--Sobic004G305300 Sobic001G191300--Sobic002G399000 Sobic001G191300--Sobic003G362800 Sobic001G191300--Sobic002G085600 Sobic002G001500 Sobic002G001500 Sobic001G191300--Sobic002G001500 Sobic002G110600 Sobic002G110600 Sobic001G191300--Sobic002G110600 Sobic009G199900 Sobic009G199900 Sobic001G104100--Sobic009G199900 Sobic001G104100--Sobic004G026000 Sobic003G106100 Sobic003G106100 Sobic001G104100--Sobic003G106100 Sobic004G314100 Sobic004G314100 Sobic001G104100--Sobic004G314100 Sobic001G028500 Sobic001G028500 Sobic001G104100--Sobic001G028500 Sobic001G104100--Sobic003G118500 Sobic001G104100--Sobic002G320700 Sobic001G104100--Sobic002G399000 Sobic007G213500 Sobic007G213500 Sobic001G104100--Sobic007G213500 Sobic002G085600--Sobic001G113400 Sobic002G085600--Sobic002G001500 Sobic009G192933 Sobic009G192933 Sobic002G085600--Sobic009G192933 Sobic002G085600--Sobic003G362800 Sobic002G085600--Sobic001G191300 Sobic002G085600--Sobic004G305300 Sobic009G223900 Sobic009G223900 Sobic002G085600--Sobic009G223900 Sobic004G144300 Sobic004G144300 Sobic002G085600--Sobic004G144300 Sobic002G398600 Sobic002G398600 Sobic002G085600--Sobic002G398600 Sobic004G350600--Sobic001G350300 Sobic004G350600--Sobic002G399000 Sobic004G350600--Sobic001G104100 Sobic004G350600--Sobic001G028500 Sobic004G350600--Sobic006G170800 Sobic004G350600--Sobic009G199900 Sobic004G350600--Sobic004G305300 Sobic004G350600--Sobic002G320700 Sobic004G350600--Sobic003G118500 Sobic002G399000--Sobic001G350300 Sobic002G399000--Sobic004G350600 Sobic002G399000--Sobic001G104100 Sobic002G399000--Sobic001G191300 Sobic002G399000--Sobic006G170800 Sobic002G399000--Sobic004G202750 Sobic002G399000--Sobic004G305300 Sobic002G399000--Sobic003G118500 Sobic002G399000--Sobic005G025400 Sobic007G077466--Sobic001G191300 Sobic007G077466--Sobic002G001500 Sobic001G503700 Sobic001G503700 Sobic007G077466--Sobic001G503700 Sobic007G077466--Sobic003G118500 Sobic007G077466--Sobic004G305300 Sobic007G077466--Sobic003G362800 Sobic007G077466--Sobic002G110600 Sobic010G000200 Sobic010G000200 Sobic007G077466--Sobic010G000200 Sobic004G173200 Sobic004G173200 Sobic007G077466--Sobic004G173200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.