Gene annotation
Transcriptome id Sobic.006G170800.1,Sobic.006G170800.2
Synonym Sb06g024610
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
lactate/malate dehydrogenase, putative, expressed
UniProt A0A1B6PMH4 , A0A1Z5REB9
Pfam PF00056 PF02866
Panther DB PTHR23382 PTHR23382:SF8
NCBI CDD KOG1496; Malate dehydrogenase
KEGG Orthology K00025; malate dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0016615malate dehydrogenase activity GO:0006108malate metabolic process


Orthologs (automatic annotation)
TAIR AT5G43330 : Lactate/malate dehydrogenase family protein
RAP-DB (Rice) LOC_Os04g46560.1 : lactate/malate dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a010309
Brachypodium KQJ83942 , KQJ83941 , PNT61609
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G350300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.002G320700 expressed protein -
3 Sobic.004G305300 - -
4 Sobic.002G399000 expressed protein -
5 Sobic.010G242000 phytosulfokine receptor precursor, putative, expressed -
6 Sobic.004G350600 AMP-binding domain containing protein, expressed -
7 Sobic.004G202750 - -
8 Sobic.001G104100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ACT domain containing protein, expressed -
9 Sobic.005G025400 CAMK_CAMK_like.42 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
10 Sobic.002G085600 - -
11 Sobic.001G113400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@seed maturation protein PM41, putative, expressed -
12 Sobic.001G191300 bile acid sodium symporter family protein, putative, expressed K03453: bile acid:Na+ symporter, BASS family
13 Sobic.007G174200 carrier, putative, expressed -
14 Sobic.009G147600 pentatricopeptide, putative, expressed -
15 Sobic.010G278400 coiled-coil domain-containing protein 12, putative, expressed K12871: coiled-coil domain-containing protein 12
16 Sobic.001G028500 expressed protein -
17 Sobic.001G350800 - -
18 Sobic.002G227100 cyclin-dependent kinase inhibitor, putative, expressed -
19 Sobic.009G181900 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
20 Sobic.009G199900 osFTL10 FT-Like10 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T


Gene co-expression network
sample Sobic006G170800 Sobic006G170800 Sobic001G350300 Sobic001G350300 Sobic006G170800--Sobic001G350300 Sobic002G320700 Sobic002G320700 Sobic006G170800--Sobic002G320700 Sobic004G305300 Sobic004G305300 Sobic006G170800--Sobic004G305300 Sobic002G399000 Sobic002G399000 Sobic006G170800--Sobic002G399000 Sobic010G242000 Sobic010G242000 Sobic006G170800--Sobic010G242000 Sobic004G350600 Sobic004G350600 Sobic006G170800--Sobic004G350600 Sobic004G202750 Sobic004G202750 Sobic006G170800--Sobic004G202750 Sobic001G104100 Sobic001G104100 Sobic006G170800--Sobic001G104100 Sobic005G025400 Sobic005G025400 Sobic006G170800--Sobic005G025400 Sobic001G350300--Sobic006G170800 Sobic001G350300--Sobic004G305300 Sobic001G350300--Sobic002G399000 Sobic001G350300--Sobic004G350600 Sobic001G191300 Sobic001G191300 Sobic001G350300--Sobic001G191300 Sobic001G350300--Sobic001G104100 Sobic001G350300--Sobic002G320700 Sobic003G118500 Sobic003G118500 Sobic001G350300--Sobic003G118500 Sobic001G113400 Sobic001G113400 Sobic001G350300--Sobic001G113400 Sobic002G320700--Sobic004G202750 Sobic002G320700--Sobic006G170800 Sobic001G033200 Sobic001G033200 Sobic002G320700--Sobic001G033200 Sobic002G320700--Sobic001G104100 Sobic002G320700--Sobic001G350300 Sobic001G028500 Sobic001G028500 Sobic002G320700--Sobic001G028500 Sobic002G320700--Sobic004G350600 Sobic001G071700 Sobic001G071700 Sobic002G320700--Sobic001G071700 Sobic002G320700--Sobic002G399000 Sobic004G305300--Sobic001G350300 Sobic004G305300--Sobic006G170800 Sobic004G305300--Sobic003G118500 Sobic004G305300--Sobic001G191300 Sobic004G305300--Sobic001G104100 Sobic002G085600 Sobic002G085600 Sobic004G305300--Sobic002G085600 Sobic004G305300--Sobic004G350600 Sobic004G305300--Sobic002G399000 Sobic007G077466 Sobic007G077466 Sobic004G305300--Sobic007G077466 Sobic002G399000--Sobic001G350300 Sobic002G399000--Sobic004G350600 Sobic002G399000--Sobic001G104100 Sobic002G399000--Sobic001G191300 Sobic002G399000--Sobic006G170800 Sobic002G399000--Sobic004G202750 Sobic002G399000--Sobic004G305300 Sobic002G399000--Sobic003G118500 Sobic002G399000--Sobic005G025400 Sobic010G242000--Sobic005G025400 Sobic010G242000--Sobic006G170800 Sobic008G159800 Sobic008G159800 Sobic010G242000--Sobic008G159800 Sobic007G114650 Sobic007G114650 Sobic010G242000--Sobic007G114650 Sobic010G242000--Sobic002G399000 Sobic003G440500 Sobic003G440500 Sobic010G242000--Sobic003G440500 Sobic010G242000--Sobic001G350300 Sobic008G134500 Sobic008G134500 Sobic010G242000--Sobic008G134500 Sobic010G242000--Sobic002G320700 Sobic004G350600--Sobic001G350300 Sobic004G350600--Sobic002G399000 Sobic004G350600--Sobic001G104100 Sobic004G350600--Sobic001G028500 Sobic004G350600--Sobic006G170800 Sobic009G199900 Sobic009G199900 Sobic004G350600--Sobic009G199900 Sobic004G350600--Sobic004G305300 Sobic004G350600--Sobic002G320700 Sobic004G350600--Sobic003G118500 Sobic004G202750--Sobic001G028500 Sobic001G350800 Sobic001G350800 Sobic004G202750--Sobic001G350800 Sobic004G202750--Sobic002G320700 Sobic009G004500 Sobic009G004500 Sobic004G202750--Sobic009G004500 Sobic004G231501 Sobic004G231501 Sobic004G202750--Sobic004G231501 Sobic004G202750--Sobic001G071700 Sobic007G061500 Sobic007G061500 Sobic004G202750--Sobic007G061500 Sobic004G202750--Sobic001G104100 Sobic001G483200 Sobic001G483200 Sobic004G202750--Sobic001G483200 Sobic001G104100--Sobic009G199900 Sobic004G026000 Sobic004G026000 Sobic001G104100--Sobic004G026000 Sobic003G106100 Sobic003G106100 Sobic001G104100--Sobic003G106100 Sobic004G314100 Sobic004G314100 Sobic001G104100--Sobic004G314100 Sobic001G104100--Sobic001G028500 Sobic001G104100--Sobic003G118500 Sobic001G104100--Sobic002G320700 Sobic001G104100--Sobic002G399000 Sobic007G213500 Sobic007G213500 Sobic001G104100--Sobic007G213500 Sobic005G025400--Sobic010G242000 Sobic005G025400--Sobic003G440500 Sobic005G025400--Sobic002G399000 Sobic005G025400--Sobic006G170800 Sobic005G025400--Sobic001G350300 Sobic009G223900 Sobic009G223900 Sobic005G025400--Sobic009G223900 Sobic005G025400--Sobic002G085600 Sobic005G025400--Sobic004G202750 Sobic005G025400--Sobic001G350800
Octagon: transcription factors


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