Gene annotation
Transcriptome id Sobic.002G320700.1
Synonym Sb02g034910
Functional annotation expressed protein
UniProt C5XA34
Pfam -
Panther DB PTHR24151 PTHR24151:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G50900 : Ankyrin repeat family protein
RAP-DB (Rice) LOC_Os07g33660.1 : expressed protein
MaizeGDB (Corn) Zm00025a048234
Brachypodium PNT75000 , PNT75001 , KQK15973
Barley -
Wheat TraesCS2A02G221000 , TraesCS2D02G226700 , TraesCS2B02G246600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G320700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G202750 - -
2 Sobic.006G170800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
3 Sobic.001G033200 GRAS family transcription factor domain containing protein, expressed -
4 Sobic.001G104100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ACT domain containing protein, expressed -
5 Sobic.001G350300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
6 Sobic.001G028500 expressed protein -
7 Sobic.004G350600 AMP-binding domain containing protein, expressed -
8 Sobic.001G071700 protein kinase family protein, putative, expressed -
9 Sobic.002G399000 expressed protein -
10 Sobic.009G199900 osFTL10 FT-Like10 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
11 Sobic.004G231501 - -
12 Sobic.001G361750 - -
13 Sobic.004G305300 - -
14 Sobic.001G483200 ataxin-2 C-terminal region family protein, expressed -
15 Sobic.009G147600 pentatricopeptide, putative, expressed -
16 Sobic.001G350800 - -
17 Sobic.007G200300 lectin protein kinase family protein, putative, expressed -
18 Sobic.003G106100 expressed protein -
19 Sobic.009G004500 expressed protein -
20 Sobic.004G149000 - -


Gene co-expression network
sample Sobic002G320700 Sobic002G320700 Sobic004G202750 Sobic004G202750 Sobic002G320700--Sobic004G202750 Sobic006G170800 Sobic006G170800 Sobic002G320700--Sobic006G170800 Sobic001G033200 Sobic001G033200 Sobic002G320700--Sobic001G033200 Sobic001G104100 Sobic001G104100 Sobic002G320700--Sobic001G104100 Sobic001G350300 Sobic001G350300 Sobic002G320700--Sobic001G350300 Sobic001G028500 Sobic001G028500 Sobic002G320700--Sobic001G028500 Sobic004G350600 Sobic004G350600 Sobic002G320700--Sobic004G350600 Sobic001G071700 Sobic001G071700 Sobic002G320700--Sobic001G071700 Sobic002G399000 Sobic002G399000 Sobic002G320700--Sobic002G399000 Sobic004G202750--Sobic001G028500 Sobic001G350800 Sobic001G350800 Sobic004G202750--Sobic001G350800 Sobic004G202750--Sobic002G320700 Sobic009G004500 Sobic009G004500 Sobic004G202750--Sobic009G004500 Sobic004G231501 Sobic004G231501 Sobic004G202750--Sobic004G231501 Sobic004G202750--Sobic001G071700 Sobic007G061500 Sobic007G061500 Sobic004G202750--Sobic007G061500 Sobic004G202750--Sobic001G104100 Sobic001G483200 Sobic001G483200 Sobic004G202750--Sobic001G483200 Sobic006G170800--Sobic001G350300 Sobic006G170800--Sobic002G320700 Sobic004G305300 Sobic004G305300 Sobic006G170800--Sobic004G305300 Sobic006G170800--Sobic002G399000 Sobic010G242000 Sobic010G242000 Sobic006G170800--Sobic010G242000 Sobic006G170800--Sobic004G350600 Sobic006G170800--Sobic004G202750 Sobic006G170800--Sobic001G104100 Sobic005G025400 Sobic005G025400 Sobic006G170800--Sobic005G025400 Sobic001G033200--Sobic002G320700 Sobic001G361750 Sobic001G361750 Sobic001G033200--Sobic001G361750 Sobic001G033200--Sobic001G071700 Sobic001G033200--Sobic004G231501 Sobic001G033200--Sobic001G483200 Sobic001G033200--Sobic001G028500 Sobic001G033200--Sobic007G061500 Sobic001G456650 Sobic001G456650 Sobic001G033200--Sobic001G456650 Sobic001G033200--Sobic004G202750 Sobic009G199900 Sobic009G199900 Sobic001G104100--Sobic009G199900 Sobic004G026000 Sobic004G026000 Sobic001G104100--Sobic004G026000 Sobic003G106100 Sobic003G106100 Sobic001G104100--Sobic003G106100 Sobic004G314100 Sobic004G314100 Sobic001G104100--Sobic004G314100 Sobic001G104100--Sobic001G028500 Sobic003G118500 Sobic003G118500 Sobic001G104100--Sobic003G118500 Sobic001G104100--Sobic002G320700 Sobic001G104100--Sobic002G399000 Sobic007G213500 Sobic007G213500 Sobic001G104100--Sobic007G213500 Sobic001G350300--Sobic006G170800 Sobic001G350300--Sobic004G305300 Sobic001G350300--Sobic002G399000 Sobic001G350300--Sobic004G350600 Sobic001G191300 Sobic001G191300 Sobic001G350300--Sobic001G191300 Sobic001G350300--Sobic001G104100 Sobic001G350300--Sobic002G320700 Sobic001G350300--Sobic003G118500 Sobic001G113400 Sobic001G113400 Sobic001G350300--Sobic001G113400 Sobic001G028500--Sobic004G231501 Sobic001G028500--Sobic007G061500 Sobic001G028500--Sobic009G004500 Sobic001G028500--Sobic003G106100 Sobic001G028500--Sobic004G202750 Sobic001G028500--Sobic004G314100 Sobic007G017300 Sobic007G017300 Sobic001G028500--Sobic007G017300 Sobic001G028500--Sobic001G483200 Sobic001G060200 Sobic001G060200 Sobic001G028500--Sobic001G060200 Sobic004G350600--Sobic001G350300 Sobic004G350600--Sobic002G399000 Sobic004G350600--Sobic001G104100 Sobic004G350600--Sobic001G028500 Sobic004G350600--Sobic006G170800 Sobic004G350600--Sobic009G199900 Sobic004G350600--Sobic004G305300 Sobic004G350600--Sobic002G320700 Sobic004G350600--Sobic003G118500 Sobic001G071700--Sobic001G350800 Sobic001G071700--Sobic004G202750 Sobic001G071700--Sobic004G231501 Sobic001G071700--Sobic001G033200 Sobic001G071700--Sobic007G061500 Sobic001G071700--Sobic001G028500 Sobic006G121200 Sobic006G121200 Sobic001G071700--Sobic006G121200 Sobic001G071700--Sobic002G320700 Sobic001G071700--Sobic004G314100 Sobic002G399000--Sobic001G350300 Sobic002G399000--Sobic004G350600 Sobic002G399000--Sobic001G104100 Sobic002G399000--Sobic001G191300 Sobic002G399000--Sobic006G170800 Sobic002G399000--Sobic004G202750 Sobic002G399000--Sobic004G305300 Sobic002G399000--Sobic003G118500 Sobic002G399000--Sobic005G025400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.