Gene annotation
Transcriptome id Sobic.001G033200.3,Sobic.001G033200.4
Synonym GRAS2, SCL14, ATGRAS2, Sb01g003110
Functional annotation GRAS family transcription factor domain containing protein, expressed
UniProt A0A1B6QH73
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF23
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07530 : SCARECROW-like 14
RAP-DB (Rice) LOC_Os04g50060.2 : GRAS family transcription factor domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008819
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G320700 expressed protein -
2 Sobic.001G361750 - -
3 Sobic.001G071700 protein kinase family protein, putative, expressed -
4 Sobic.004G231501 - -
5 Sobic.001G483200 ataxin-2 C-terminal region family protein, expressed -
6 Sobic.001G028500 expressed protein -
7 Sobic.007G061500 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
8 Sobic.001G456650 - K13066: E2.1.1.68, caffeic acid 3-O-methyltransferase
9 Sobic.004G202750 - -
10 Sobic.006G121200 high affinity nitrate transporter, putative, expressed -
11 Sobic.001G350800 - -
12 Sobic.009G004500 expressed protein -
13 Sobic.003G106100 expressed protein -
14 Sobic.004G203600 Regulator of chromosome condensation domain containing protein, expressed -
15 Sobic.001G368000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@annexin, putative, expressed -
16 Sobic.001G468200 MT-A70 domain containing protein, expressed -
17 Sobic.007G017300 endoglucanase, putative, expressed -
18 Sobic.001G527900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nascent polypeptide-associated complex subunit alpha, putative, expressed K03626: EGD2, nascent polypeptide-associated complex subunit alpha
19 Sobic.001G104100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ACT domain containing protein, expressed -
20 Sobic.004G314100 GS9(Ortholog in rice:Zhao et al.(2018))(PubMedID : 31659890)@expressed protein -


Gene co-expression network
sample Sobic001G033200 Sobic001G033200 Sobic002G320700 Sobic002G320700 Sobic001G033200--Sobic002G320700 Sobic001G361750 Sobic001G361750 Sobic001G033200--Sobic001G361750 Sobic001G071700 Sobic001G071700 Sobic001G033200--Sobic001G071700 Sobic004G231501 Sobic004G231501 Sobic001G033200--Sobic004G231501 Sobic001G483200 Sobic001G483200 Sobic001G033200--Sobic001G483200 Sobic001G028500 Sobic001G028500 Sobic001G033200--Sobic001G028500 Sobic007G061500 Sobic007G061500 Sobic001G033200--Sobic007G061500 Sobic001G456650 Sobic001G456650 Sobic001G033200--Sobic001G456650 Sobic004G202750 Sobic004G202750 Sobic001G033200--Sobic004G202750 Sobic002G320700--Sobic004G202750 Sobic006G170800 Sobic006G170800 Sobic002G320700--Sobic006G170800 Sobic002G320700--Sobic001G033200 Sobic001G104100 Sobic001G104100 Sobic002G320700--Sobic001G104100 Sobic001G350300 Sobic001G350300 Sobic002G320700--Sobic001G350300 Sobic002G320700--Sobic001G028500 Sobic004G350600 Sobic004G350600 Sobic002G320700--Sobic004G350600 Sobic002G320700--Sobic001G071700 Sobic002G399000 Sobic002G399000 Sobic002G320700--Sobic002G399000 Sobic001G361750--Sobic001G456650 Sobic001G361750--Sobic001G483200 Sobic001G361750--Sobic001G033200 Sobic001G468200 Sobic001G468200 Sobic001G361750--Sobic001G468200 Sobic001G527900 Sobic001G527900 Sobic001G361750--Sobic001G527900 Sobic002G360701 Sobic002G360701 Sobic001G361750--Sobic002G360701 Sobic009G004300 Sobic009G004300 Sobic001G361750--Sobic009G004300 Sobic005G155001 Sobic005G155001 Sobic001G361750--Sobic005G155001 Sobic006G093400 Sobic006G093400 Sobic001G361750--Sobic006G093400 Sobic001G350800 Sobic001G350800 Sobic001G071700--Sobic001G350800 Sobic001G071700--Sobic004G202750 Sobic001G071700--Sobic004G231501 Sobic001G071700--Sobic001G033200 Sobic001G071700--Sobic007G061500 Sobic001G071700--Sobic001G028500 Sobic006G121200 Sobic006G121200 Sobic001G071700--Sobic006G121200 Sobic001G071700--Sobic002G320700 Sobic004G314100 Sobic004G314100 Sobic001G071700--Sobic004G314100 Sobic004G231501--Sobic001G028500 Sobic004G231501--Sobic007G061500 Sobic004G231501--Sobic004G314100 Sobic003G106100 Sobic003G106100 Sobic004G231501--Sobic003G106100 Sobic009G004500 Sobic009G004500 Sobic004G231501--Sobic009G004500 Sobic007G017300 Sobic007G017300 Sobic004G231501--Sobic007G017300 Sobic004G231501--Sobic004G202750 Sobic004G231501--Sobic001G483200 Sobic001G368000 Sobic001G368000 Sobic004G231501--Sobic001G368000 Sobic001G483200--Sobic007G017300 Sobic001G483200--Sobic005G155001 Sobic001G483200--Sobic009G004500 Sobic001G483200--Sobic001G368000 Sobic001G483200--Sobic007G061500 Sobic007G213500 Sobic007G213500 Sobic001G483200--Sobic007G213500 Sobic001G483200--Sobic001G527900 Sobic001G483200--Sobic001G028500 Sobic001G483200--Sobic001G468200 Sobic001G028500--Sobic004G231501 Sobic001G028500--Sobic007G061500 Sobic001G028500--Sobic009G004500 Sobic001G028500--Sobic003G106100 Sobic001G028500--Sobic004G202750 Sobic001G028500--Sobic004G314100 Sobic001G028500--Sobic007G017300 Sobic001G028500--Sobic001G483200 Sobic001G060200 Sobic001G060200 Sobic001G028500--Sobic001G060200 Sobic007G061500--Sobic004G231501 Sobic007G061500--Sobic001G028500 Sobic007G061500--Sobic004G314100 Sobic007G061500--Sobic009G004500 Sobic007G061500--Sobic007G017300 Sobic007G061500--Sobic001G368000 Sobic003G093500 Sobic003G093500 Sobic007G061500--Sobic003G093500 Sobic007G061500--Sobic003G106100 Sobic007G061500--Sobic001G483200 Sobic007G200200 Sobic007G200200 Sobic001G456650--Sobic007G200200 Sobic007G165200 Sobic007G165200 Sobic001G456650--Sobic007G165200 Sobic001G456650--Sobic001G361750 Sobic001G068901 Sobic001G068901 Sobic001G456650--Sobic001G068901 Sobic001G456650--Sobic006G093400 Sobic001G061000 Sobic001G061000 Sobic001G456650--Sobic001G061000 Sobic001G456650--Sobic001G033200 Sobic009G072400 Sobic009G072400 Sobic001G456650--Sobic009G072400 Sobic006G232300 Sobic006G232300 Sobic001G456650--Sobic006G232300 Sobic004G202750--Sobic001G028500 Sobic004G202750--Sobic001G350800 Sobic004G202750--Sobic002G320700 Sobic004G202750--Sobic009G004500 Sobic004G202750--Sobic004G231501 Sobic004G202750--Sobic001G071700 Sobic004G202750--Sobic007G061500 Sobic004G202750--Sobic001G104100 Sobic004G202750--Sobic001G483200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.