Gene annotation
Transcriptome id Sobic.001G483200.1,Sobic.001G483200.5,Sobic.001G483200.3,Sobic.001G483200.2
Synonym CID7
Functional annotation ataxin-2 C-terminal region family protein, expressed
UniProt A0A1B6QQ59 , A0A1B6QQ52 , A0A1B6QQ45
Pfam PF07145
Panther DB PTHR13308 PTHR13308:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G26280 : CTC-interacting domain 7
RAP-DB (Rice) LOC_Os03g08270.6,LOC_Os03g08270.5,LOC_Os03g08270.2 : ataxin-2 C-terminal region family protein, expressed
MaizeGDB (Corn) Zm00025a053287 , Zm00025a000918
Brachypodium KQK23318 , KQK23319 , KQK23316 , KQK23317 , KQK23315 , KQK23322 , KQK23321 , KQK23320
Barley HORVU4Hr1G076720.10 , HORVU4Hr1G076720.11 , HORVU4Hr1G076720.12 , HORVU4Hr1G076720.13 , HORVU4Hr1G076720.2 , HORVU4Hr1G076720.3 , HORVU4Hr1G076720.1 , HORVU4Hr1G076720.7 , HORVU4Hr1G076720.4 , HORVU4Hr1G076720.5 , HORVU4Hr1G076720.8 , HORVU4Hr1G076720.9 , HORVU4Hr1G076720.6
Wheat TraesCS4D02G295000 , TraesCS4D02G295000 , TraesCS4B02G296300 , TraesCS4B02G296300 , TraesCS4B02G296300 , TraesCS4B02G296300 , TraesCS4B02G296300 , TraesCS4B02G296300 , TraesCS4D02G295000 , TraesCS4D02G295000 , TraesCS4D02G295000 , TraesCS4D02G295000 , TraesCS4D02G295000 , TraesCS4A02G008700 , TraesCS4A02G008700 , TraesCS4A02G008700 , TraesCS4A02G008700 , TraesCS4A02G008700 , TraesCS4A02G008700
Populus -


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cDNA sequences
Sobic.001G483200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G017300 endoglucanase, putative, expressed -
2 Sobic.005G155001 - -
3 Sobic.009G004500 expressed protein -
4 Sobic.001G368000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@annexin, putative, expressed -
5 Sobic.007G061500 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
6 Sobic.007G213500 expressed protein -
7 Sobic.001G527900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nascent polypeptide-associated complex subunit alpha, putative, expressed K03626: EGD2, nascent polypeptide-associated complex subunit alpha
8 Sobic.001G028500 expressed protein -
9 Sobic.001G468200 MT-A70 domain containing protein, expressed -
10 Sobic.006G093400 potassium channel SKOR, putative, expressed -
11 Sobic.008G185000 - -
12 Sobic.010G021401 - -
13 Sobic.009G114900 - -
14 Sobic.004G231501 - -
15 Sobic.001G361750 - -
16 Sobic.002G360701 - -
17 Sobic.009G184500 cysteine proteinase inhibitor precursor protein, putative, expressed -
18 Sobic.001G490600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed -
19 Sobic.001G176800 - -
20 Sobic.008G192800 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -


Gene co-expression network
sample Sobic001G483200 Sobic001G483200 Sobic007G017300 Sobic007G017300 Sobic001G483200--Sobic007G017300 Sobic005G155001 Sobic005G155001 Sobic001G483200--Sobic005G155001 Sobic009G004500 Sobic009G004500 Sobic001G483200--Sobic009G004500 Sobic001G368000 Sobic001G368000 Sobic001G483200--Sobic001G368000 Sobic007G061500 Sobic007G061500 Sobic001G483200--Sobic007G061500 Sobic007G213500 Sobic007G213500 Sobic001G483200--Sobic007G213500 Sobic001G527900 Sobic001G527900 Sobic001G483200--Sobic001G527900 Sobic001G028500 Sobic001G028500 Sobic001G483200--Sobic001G028500 Sobic001G468200 Sobic001G468200 Sobic001G483200--Sobic001G468200 Sobic007G017300--Sobic001G368000 Sobic007G017300--Sobic001G483200 Sobic007G017300--Sobic009G004500 Sobic007G017300--Sobic005G155001 Sobic007G017300--Sobic007G061500 Sobic003G093500 Sobic003G093500 Sobic007G017300--Sobic003G093500 Sobic007G017300--Sobic007G213500 Sobic007G017300--Sobic001G028500 Sobic007G017300--Sobic001G468200 Sobic005G155001--Sobic001G483200 Sobic009G114900 Sobic009G114900 Sobic005G155001--Sobic009G114900 Sobic005G155001--Sobic009G004500 Sobic005G155001--Sobic007G017300 Sobic010G021401 Sobic010G021401 Sobic005G155001--Sobic010G021401 Sobic005G155001--Sobic001G527900 Sobic005G155001--Sobic001G368000 Sobic008G185000 Sobic008G185000 Sobic005G155001--Sobic008G185000 Sobic007G090406 Sobic007G090406 Sobic005G155001--Sobic007G090406 Sobic009G004500--Sobic007G017300 Sobic009G004500--Sobic001G483200 Sobic009G004500--Sobic005G155001 Sobic009G004500--Sobic001G368000 Sobic009G004500--Sobic007G061500 Sobic009G004500--Sobic001G028500 Sobic009G004500--Sobic003G093500 Sobic009G004500--Sobic010G021401 Sobic001G060200 Sobic001G060200 Sobic009G004500--Sobic001G060200 Sobic001G368000--Sobic007G017300 Sobic001G368000--Sobic009G004500 Sobic001G368000--Sobic001G483200 Sobic001G368000--Sobic007G061500 Sobic001G490600 Sobic001G490600 Sobic001G368000--Sobic001G490600 Sobic001G368000--Sobic005G155001 Sobic001G368000--Sobic001G468200 Sobic001G368000--Sobic007G213500 Sobic009G184500 Sobic009G184500 Sobic001G368000--Sobic009G184500 Sobic004G231501 Sobic004G231501 Sobic007G061500--Sobic004G231501 Sobic007G061500--Sobic001G028500 Sobic004G314100 Sobic004G314100 Sobic007G061500--Sobic004G314100 Sobic007G061500--Sobic009G004500 Sobic007G061500--Sobic007G017300 Sobic007G061500--Sobic001G368000 Sobic007G061500--Sobic003G093500 Sobic003G106100 Sobic003G106100 Sobic007G061500--Sobic003G106100 Sobic007G061500--Sobic001G483200 Sobic004G026000 Sobic004G026000 Sobic007G213500--Sobic004G026000 Sobic006G121200 Sobic006G121200 Sobic007G213500--Sobic006G121200 Sobic007G213500--Sobic004G314100 Sobic007G213500--Sobic007G017300 Sobic007G213500--Sobic001G483200 Sobic007G213500--Sobic001G368000 Sobic007G213500--Sobic003G106100 Sobic007G213500--Sobic007G061500 Sobic001G104100 Sobic001G104100 Sobic007G213500--Sobic001G104100 Sobic001G527900--Sobic005G155001 Sobic001G527900--Sobic001G483200 Sobic001G527900--Sobic009G114900 Sobic002G314950 Sobic002G314950 Sobic001G527900--Sobic002G314950 Sobic001G527900--Sobic009G004500 Sobic001G527900--Sobic010G021401 Sobic001G527900--Sobic001G060200 Sobic001G527900--Sobic007G017300 Sobic001G527900--Sobic007G090406 Sobic001G028500--Sobic004G231501 Sobic001G028500--Sobic007G061500 Sobic001G028500--Sobic009G004500 Sobic001G028500--Sobic003G106100 Sobic004G202750 Sobic004G202750 Sobic001G028500--Sobic004G202750 Sobic001G028500--Sobic004G314100 Sobic001G028500--Sobic007G017300 Sobic001G028500--Sobic001G483200 Sobic001G028500--Sobic001G060200 Sobic003G155350 Sobic003G155350 Sobic001G468200--Sobic003G155350 Sobic001G468200--Sobic007G017300 Sobic001G468200--Sobic001G483200 Sobic001G468200--Sobic001G368000 Sobic001G176800 Sobic001G176800 Sobic001G468200--Sobic001G176800 Sobic004G184500 Sobic004G184500 Sobic001G468200--Sobic004G184500 Sobic005G094500 Sobic005G094500 Sobic001G468200--Sobic005G094500 Sobic003G202900 Sobic003G202900 Sobic001G468200--Sobic003G202900 Sobic009G170301 Sobic009G170301 Sobic001G468200--Sobic009G170301
Octagon: transcription factors


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