Gene annotation
Transcriptome id Sobic.006G243000.1
Synonym CCB4, Sb06g030890
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CCB4, putative, expressed
UniProt A0A1B6PNM9
Pfam PF11152
Panther DB PTHR34943:SF2 PTHR34943
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G59840 : cofactor assembly of complex C
RAP-DB (Rice) LOC_Os04g55690.1 : CCB4, putative, expressed
MaizeGDB (Corn) Zm00025a009512
Brachypodium KQJ85005
Barley -
Wheat TraesCS2B02G539300 , TraesCS2D02G512600
Populus -


JBrowse

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cDNA sequences
Sobic.006G243000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G143901 - -
2 Sobic.001G096200 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
3 Sobic.006G213350 - -
4 Sobic.002G395900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@nodulation protein-related, putative, expressed -
5 Sobic.001G483001 - -
6 Sobic.001G520000 auxin efflux carrier component, putative, expressed -
7 Sobic.004G026000 ankyrin repeat domain-containing protein, chloroplast precursor, putative, expressed -
8 Sobic.009G045100 proline synthetase co-transcribed bacterial homolog protein, putative, expressed K06997: yggS, PLP dependent protein
9 Sobic.001G018550 - -
10 Sobic.001G156401 - -
11 Sobic.002G413700 expressed protein K16275: BAH, E3 ubiquitin-protein ligase BAH
12 Sobic.004G310400 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
13 Sobic.004G231501 - -
14 Sobic.001G010900 OsGrx_S14 - glutaredoxin subgroup II, expressed K07390: grxD, monothiol glutaredoxin
15 Sobic.004G314100 GS9(Ortholog in rice:Zhao et al.(2018))(PubMedID : 31659890)@expressed protein -
16 Sobic.008G160100 - -
17 Sobic.002G209450 - -
18 Sobic.001G139800 growth regulating factor protein, putative, expressed -
19 Sobic.001G494400 DUF593 domain containing protein, expressed -
20 Sobic.001G213300 cytochrome P450, putative, expressed K15402: fatty acid omega-hydroxylase


Gene co-expression network
sample Sobic006G243000 Sobic006G243000 Sobic008G143901 Sobic008G143901 Sobic006G243000--Sobic008G143901 Sobic001G096200 Sobic001G096200 Sobic006G243000--Sobic001G096200 Sobic006G213350 Sobic006G213350 Sobic006G243000--Sobic006G213350 Sobic002G395900 Sobic002G395900 Sobic006G243000--Sobic002G395900 Sobic001G483001 Sobic001G483001 Sobic006G243000--Sobic001G483001 Sobic001G520000 Sobic001G520000 Sobic006G243000--Sobic001G520000 Sobic004G026000 Sobic004G026000 Sobic006G243000--Sobic004G026000 Sobic009G045100 Sobic009G045100 Sobic006G243000--Sobic009G045100 Sobic001G018550 Sobic001G018550 Sobic006G243000--Sobic001G018550 Sobic008G143901--Sobic001G483001 Sobic008G143901--Sobic006G243000 Sobic008G143901--Sobic006G213350 Sobic002G413700 Sobic002G413700 Sobic008G143901--Sobic002G413700 Sobic008G143901--Sobic001G520000 Sobic008G160100 Sobic008G160100 Sobic008G143901--Sobic008G160100 Sobic001G139800 Sobic001G139800 Sobic008G143901--Sobic001G139800 Sobic008G143901--Sobic001G096200 Sobic001G156401 Sobic001G156401 Sobic008G143901--Sobic001G156401 Sobic004G310400 Sobic004G310400 Sobic001G096200--Sobic004G310400 Sobic001G096200--Sobic004G026000 Sobic001G096200--Sobic001G520000 Sobic004G314100 Sobic004G314100 Sobic001G096200--Sobic004G314100 Sobic003G155800 Sobic003G155800 Sobic001G096200--Sobic003G155800 Sobic001G096200--Sobic006G243000 Sobic003G118500 Sobic003G118500 Sobic001G096200--Sobic003G118500 Sobic003G253700 Sobic003G253700 Sobic001G096200--Sobic003G253700 Sobic004G231501 Sobic004G231501 Sobic001G096200--Sobic004G231501 Sobic006G213350--Sobic001G520000 Sobic005G031400 Sobic005G031400 Sobic006G213350--Sobic005G031400 Sobic006G213350--Sobic001G483001 Sobic006G213350--Sobic008G160100 Sobic010G012200 Sobic010G012200 Sobic006G213350--Sobic010G012200 Sobic006G213350--Sobic008G143901 Sobic006G213350--Sobic003G253700 Sobic006G213350--Sobic006G243000 Sobic006G157450 Sobic006G157450 Sobic006G213350--Sobic006G157450 Sobic002G395900--Sobic009G045100 Sobic005G094500 Sobic005G094500 Sobic002G395900--Sobic005G094500 Sobic003G202900 Sobic003G202900 Sobic002G395900--Sobic003G202900 Sobic007G017300 Sobic007G017300 Sobic002G395900--Sobic007G017300 Sobic001G368000 Sobic001G368000 Sobic002G395900--Sobic001G368000 Sobic009G170301 Sobic009G170301 Sobic002G395900--Sobic009G170301 Sobic001G468200 Sobic001G468200 Sobic002G395900--Sobic001G468200 Sobic003G155350 Sobic003G155350 Sobic002G395900--Sobic003G155350 Sobic001G176800 Sobic001G176800 Sobic002G395900--Sobic001G176800 Sobic001G483001--Sobic001G520000 Sobic001G483001--Sobic006G213350 Sobic001G483001--Sobic008G143901 Sobic001G483001--Sobic008G160100 Sobic001G483001--Sobic006G157450 Sobic001G483001--Sobic005G031400 Sobic008G170800 Sobic008G170800 Sobic001G483001--Sobic008G170800 Sobic001G483001--Sobic010G012200 Sobic001G483001--Sobic003G253700 Sobic001G520000--Sobic003G253700 Sobic001G520000--Sobic006G213350 Sobic001G520000--Sobic001G483001 Sobic001G520000--Sobic010G012200 Sobic003G155000 Sobic003G155000 Sobic001G520000--Sobic003G155000 Sobic001G520000--Sobic008G160100 Sobic001G520000--Sobic006G157450 Sobic001G520000--Sobic001G096200 Sobic001G520000--Sobic008G170800 Sobic004G026000--Sobic004G310400 Sobic007G213500 Sobic007G213500 Sobic004G026000--Sobic007G213500 Sobic004G026000--Sobic004G314100 Sobic001G104100 Sobic001G104100 Sobic004G026000--Sobic001G104100 Sobic004G026000--Sobic001G096200 Sobic006G121200 Sobic006G121200 Sobic004G026000--Sobic006G121200 Sobic003G106100 Sobic003G106100 Sobic004G026000--Sobic003G106100 Sobic004G026000--Sobic004G231501 Sobic001G028500 Sobic001G028500 Sobic004G026000--Sobic001G028500 Sobic009G045100--Sobic002G395900 Sobic003G093500 Sobic003G093500 Sobic009G045100--Sobic003G093500 Sobic009G045100--Sobic007G017300 Sobic009G045100--Sobic003G202900 Sobic009G045100--Sobic001G176800 Sobic007G061500 Sobic007G061500 Sobic009G045100--Sobic007G061500 Sobic009G045100--Sobic005G094500 Sobic004G047001 Sobic004G047001 Sobic009G045100--Sobic004G047001 Sobic009G045100--Sobic001G368000 Sobic002G231400 Sobic002G231400 Sobic001G018550--Sobic002G231400 Sobic003G241600 Sobic003G241600 Sobic001G018550--Sobic003G241600 Sobic004G200000 Sobic004G200000 Sobic001G018550--Sobic004G200000 Sobic005G096201 Sobic005G096201 Sobic001G018550--Sobic005G096201 Sobic003G043650 Sobic003G043650 Sobic001G018550--Sobic003G043650 Sobic002G209450 Sobic002G209450 Sobic001G018550--Sobic002G209450 Sobic005G083866 Sobic005G083866 Sobic001G018550--Sobic005G083866 Sobic007G016300 Sobic007G016300 Sobic001G018550--Sobic007G016300 Sobic002G346250 Sobic002G346250 Sobic001G018550--Sobic002G346250
Octagon: transcription factors


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