Gene annotation
Transcriptome id Sobic.002G395900.1,Sobic.002G395900.2,Sobic.002G395900.3
Synonym Sb02g041100
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
nodulation protein-related, putative, expressed
UniProt C5X3Z6
Pfam PF00685
Panther DB PTHR32175 PTHR32175:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008146; sulfotransferase activity


Orthologs (automatic annotation)
TAIR AT2G15730 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os07g44960.2 : nodulation protein-related, putative, expressed
MaizeGDB (Corn) Zm00025a048963
Brachypodium PNT74653 , PNT74654 , KQK14945 , KQK14944
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G395900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G045100 proline synthetase co-transcribed bacterial homolog protein, putative, expressed K06997: yggS, PLP dependent protein
2 Sobic.005G094500 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed -
3 Sobic.003G202900 expressed protein -
4 Sobic.007G017300 endoglucanase, putative, expressed -
5 Sobic.001G368000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@annexin, putative, expressed -
6 Sobic.009G170301 - -
7 Sobic.001G468200 MT-A70 domain containing protein, expressed -
8 Sobic.003G155350 - -
9 Sobic.001G176800 - -
10 Sobic.007G061500 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
11 Sobic.003G093500 protein binding protein, putative, expressed -
12 Sobic.007G213500 expressed protein -
13 Sobic.006G243000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCB4, putative, expressed -
14 Sobic.009G082500 - -
15 Sobic.001G483200 ataxin-2 C-terminal region family protein, expressed -
16 Sobic.003G043650 - -
17 Sobic.002G138200 domain of unknown function DUF966 domain containing protein, expressed -
18 Sobic.004G047001 - -
19 Sobic.004G184500 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
20 Sobic.002G076932 - -


Gene co-expression network
sample Sobic002G395900 Sobic002G395900 Sobic009G045100 Sobic009G045100 Sobic002G395900--Sobic009G045100 Sobic005G094500 Sobic005G094500 Sobic002G395900--Sobic005G094500 Sobic003G202900 Sobic003G202900 Sobic002G395900--Sobic003G202900 Sobic007G017300 Sobic007G017300 Sobic002G395900--Sobic007G017300 Sobic001G368000 Sobic001G368000 Sobic002G395900--Sobic001G368000 Sobic009G170301 Sobic009G170301 Sobic002G395900--Sobic009G170301 Sobic001G468200 Sobic001G468200 Sobic002G395900--Sobic001G468200 Sobic003G155350 Sobic003G155350 Sobic002G395900--Sobic003G155350 Sobic001G176800 Sobic001G176800 Sobic002G395900--Sobic001G176800 Sobic009G045100--Sobic002G395900 Sobic003G093500 Sobic003G093500 Sobic009G045100--Sobic003G093500 Sobic009G045100--Sobic007G017300 Sobic009G045100--Sobic003G202900 Sobic009G045100--Sobic001G176800 Sobic007G061500 Sobic007G061500 Sobic009G045100--Sobic007G061500 Sobic009G045100--Sobic005G094500 Sobic004G047001 Sobic004G047001 Sobic009G045100--Sobic004G047001 Sobic009G045100--Sobic001G368000 Sobic005G094500--Sobic002G395900 Sobic004G184500 Sobic004G184500 Sobic005G094500--Sobic004G184500 Sobic005G094500--Sobic003G202900 Sobic005G094500--Sobic003G155350 Sobic002G076932 Sobic002G076932 Sobic005G094500--Sobic002G076932 Sobic005G094500--Sobic009G170301 Sobic005G094500--Sobic001G176800 Sobic008G166250 Sobic008G166250 Sobic005G094500--Sobic008G166250 Sobic005G094500--Sobic007G017300 Sobic003G202900--Sobic002G395900 Sobic003G202900--Sobic005G094500 Sobic003G202900--Sobic001G176800 Sobic003G202900--Sobic009G045100 Sobic003G202900--Sobic004G184500 Sobic003G202900--Sobic001G468200 Sobic003G202900--Sobic009G170301 Sobic003G202900--Sobic007G017300 Sobic003G202900--Sobic001G368000 Sobic007G017300--Sobic001G368000 Sobic001G483200 Sobic001G483200 Sobic007G017300--Sobic001G483200 Sobic009G004500 Sobic009G004500 Sobic007G017300--Sobic009G004500 Sobic005G155001 Sobic005G155001 Sobic007G017300--Sobic005G155001 Sobic007G017300--Sobic007G061500 Sobic007G017300--Sobic003G093500 Sobic007G213500 Sobic007G213500 Sobic007G017300--Sobic007G213500 Sobic001G028500 Sobic001G028500 Sobic007G017300--Sobic001G028500 Sobic007G017300--Sobic001G468200 Sobic001G368000--Sobic007G017300 Sobic001G368000--Sobic009G004500 Sobic001G368000--Sobic001G483200 Sobic001G368000--Sobic007G061500 Sobic001G490600 Sobic001G490600 Sobic001G368000--Sobic001G490600 Sobic001G368000--Sobic005G155001 Sobic001G368000--Sobic001G468200 Sobic001G368000--Sobic007G213500 Sobic009G184500 Sobic009G184500 Sobic001G368000--Sobic009G184500 Sobic009G170301--Sobic002G076932 Sobic009G170301--Sobic005G094500 Sobic010G041500 Sobic010G041500 Sobic009G170301--Sobic010G041500 Sobic009G170301--Sobic001G368000 Sobic009G170301--Sobic003G202900 Sobic009G170301--Sobic002G395900 Sobic009G170301--Sobic001G468200 Sobic009G170301--Sobic001G490600 Sobic009G170301--Sobic007G017300 Sobic001G468200--Sobic003G155350 Sobic001G468200--Sobic007G017300 Sobic001G468200--Sobic001G483200 Sobic001G468200--Sobic001G368000 Sobic001G468200--Sobic001G176800 Sobic001G468200--Sobic004G184500 Sobic001G468200--Sobic005G094500 Sobic001G468200--Sobic003G202900 Sobic001G468200--Sobic009G170301 Sobic003G155350--Sobic004G184500 Sobic003G155350--Sobic001G468200 Sobic003G155350--Sobic005G094500 Sobic003G155350--Sobic008G166250 Sobic003G155350--Sobic007G017300 Sobic002G018133 Sobic002G018133 Sobic003G155350--Sobic002G018133 Sobic002G346250 Sobic002G346250 Sobic003G155350--Sobic002G346250 Sobic003G155350--Sobic001G368000 Sobic003G155350--Sobic002G395900 Sobic001G176800--Sobic004G184500 Sobic001G176800--Sobic003G202900 Sobic008G192800 Sobic008G192800 Sobic001G176800--Sobic008G192800 Sobic001G176800--Sobic005G094500 Sobic001G176800--Sobic007G017300 Sobic001G176800--Sobic009G045100 Sobic007G090406 Sobic007G090406 Sobic001G176800--Sobic007G090406 Sobic001G176800--Sobic001G468200 Sobic005G001600 Sobic005G001600 Sobic001G176800--Sobic005G001600
Octagon: transcription factors


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