Gene annotation
Transcriptome id Sobic.003G093500.5,Sobic.003G093500.1,Sobic.003G093500.3
Synonym Sb03g007810
Functional annotation protein binding protein, putative, expressed
UniProt C5XE76 , A0A1B6Q2B2
Pfam PF12906 PF12428
Panther DB PTHR23012 PTHR23012:SF89
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT2G01275 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os01g03100.1,LOC_Os01g03100.2 : protein binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a035506
Brachypodium KQK02461 , KQK02460 , KQK02463 , KQK02462 , KQK02464 , PNT69857 , PNT69858
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G004500 expressed protein -
2 Sobic.007G061500 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
3 Sobic.007G017300 endoglucanase, putative, expressed -
4 Sobic.001G341900 domain of unknown function domain containing protein, expressed -
5 Sobic.008G192800 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
6 Sobic.009G045100 proline synthetase co-transcribed bacterial homolog protein, putative, expressed K06997: yggS, PLP dependent protein
7 Sobic.005G155001 - -
8 Sobic.004G224100 RPA2B - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
9 Sobic.001G060200 - -
10 Sobic.001G028500 expressed protein -
11 Sobic.001G368000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@annexin, putative, expressed -
12 Sobic.004G314100 GS9(Ortholog in rice:Zhao et al.(2018))(PubMedID : 31659890)@expressed protein -
13 Sobic.004G337700 expressed protein -
14 Sobic.002G138200 domain of unknown function DUF966 domain containing protein, expressed -
15 Sobic.004G231501 - -
16 Sobic.004G047001 - -
17 Sobic.009G184500 cysteine proteinase inhibitor precursor protein, putative, expressed -
18 Sobic.009G114900 - -
19 Sobic.001G483200 ataxin-2 C-terminal region family protein, expressed -
20 Sobic.002G395900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@nodulation protein-related, putative, expressed -


Gene co-expression network
sample Sobic003G093500 Sobic003G093500 Sobic009G004500 Sobic009G004500 Sobic003G093500--Sobic009G004500 Sobic007G061500 Sobic007G061500 Sobic003G093500--Sobic007G061500 Sobic007G017300 Sobic007G017300 Sobic003G093500--Sobic007G017300 Sobic001G341900 Sobic001G341900 Sobic003G093500--Sobic001G341900 Sobic008G192800 Sobic008G192800 Sobic003G093500--Sobic008G192800 Sobic009G045100 Sobic009G045100 Sobic003G093500--Sobic009G045100 Sobic005G155001 Sobic005G155001 Sobic003G093500--Sobic005G155001 Sobic004G224100 Sobic004G224100 Sobic003G093500--Sobic004G224100 Sobic001G060200 Sobic001G060200 Sobic003G093500--Sobic001G060200 Sobic009G004500--Sobic007G017300 Sobic001G483200 Sobic001G483200 Sobic009G004500--Sobic001G483200 Sobic009G004500--Sobic005G155001 Sobic001G368000 Sobic001G368000 Sobic009G004500--Sobic001G368000 Sobic009G004500--Sobic007G061500 Sobic001G028500 Sobic001G028500 Sobic009G004500--Sobic001G028500 Sobic009G004500--Sobic003G093500 Sobic010G021401 Sobic010G021401 Sobic009G004500--Sobic010G021401 Sobic009G004500--Sobic001G060200 Sobic004G231501 Sobic004G231501 Sobic007G061500--Sobic004G231501 Sobic007G061500--Sobic001G028500 Sobic004G314100 Sobic004G314100 Sobic007G061500--Sobic004G314100 Sobic007G061500--Sobic009G004500 Sobic007G061500--Sobic007G017300 Sobic007G061500--Sobic001G368000 Sobic007G061500--Sobic003G093500 Sobic003G106100 Sobic003G106100 Sobic007G061500--Sobic003G106100 Sobic007G061500--Sobic001G483200 Sobic007G017300--Sobic001G368000 Sobic007G017300--Sobic001G483200 Sobic007G017300--Sobic009G004500 Sobic007G017300--Sobic005G155001 Sobic007G017300--Sobic007G061500 Sobic007G017300--Sobic003G093500 Sobic007G213500 Sobic007G213500 Sobic007G017300--Sobic007G213500 Sobic007G017300--Sobic001G028500 Sobic001G468200 Sobic001G468200 Sobic007G017300--Sobic001G468200 Sobic001G341900--Sobic003G093500 Sobic001G341900--Sobic007G061500 Sobic001G341900--Sobic009G004500 Sobic001G341900--Sobic004G224100 Sobic004G337700 Sobic004G337700 Sobic001G341900--Sobic004G337700 Sobic001G341900--Sobic008G192800 Sobic001G341900--Sobic009G045100 Sobic001G341900--Sobic001G368000 Sobic009G114900 Sobic009G114900 Sobic001G341900--Sobic009G114900 Sobic007G090406 Sobic007G090406 Sobic008G192800--Sobic007G090406 Sobic008G192800--Sobic009G004500 Sobic008G192800--Sobic003G093500 Sobic001G176800 Sobic001G176800 Sobic008G192800--Sobic001G176800 Sobic008G192800--Sobic009G114900 Sobic008G192800--Sobic005G155001 Sobic008G192800--Sobic007G017300 Sobic008G192800--Sobic007G061500 Sobic008G192800--Sobic001G368000 Sobic002G395900 Sobic002G395900 Sobic009G045100--Sobic002G395900 Sobic009G045100--Sobic003G093500 Sobic009G045100--Sobic007G017300 Sobic003G202900 Sobic003G202900 Sobic009G045100--Sobic003G202900 Sobic009G045100--Sobic001G176800 Sobic009G045100--Sobic007G061500 Sobic005G094500 Sobic005G094500 Sobic009G045100--Sobic005G094500 Sobic004G047001 Sobic004G047001 Sobic009G045100--Sobic004G047001 Sobic009G045100--Sobic001G368000 Sobic005G155001--Sobic001G483200 Sobic005G155001--Sobic009G114900 Sobic005G155001--Sobic009G004500 Sobic005G155001--Sobic007G017300 Sobic005G155001--Sobic010G021401 Sobic001G527900 Sobic001G527900 Sobic005G155001--Sobic001G527900 Sobic005G155001--Sobic001G368000 Sobic008G185000 Sobic008G185000 Sobic005G155001--Sobic008G185000 Sobic005G155001--Sobic007G090406 Sobic005G096201 Sobic005G096201 Sobic004G224100--Sobic005G096201 Sobic002G013600 Sobic002G013600 Sobic004G224100--Sobic002G013600 Sobic004G224100--Sobic003G093500 Sobic003G139100 Sobic003G139100 Sobic004G224100--Sobic003G139100 Sobic004G224100--Sobic001G341900 Sobic004G224100--Sobic001G060200 Sobic004G224100--Sobic004G047001 Sobic004G224100--Sobic008G192800 Sobic004G224100--Sobic007G061500 Sobic001G060200--Sobic009G004500 Sobic001G060200--Sobic001G028500 Sobic001G060200--Sobic003G093500 Sobic001G060200--Sobic007G061500 Sobic001G060200--Sobic005G155001 Sobic001G060200--Sobic003G106100 Sobic001G060200--Sobic001G527900 Sobic001G060200--Sobic007G017300 Sobic001G060200--Sobic004G224100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.