Gene annotation
Transcriptome id Sobic.004G224100.1,Sobic.004G224100.2
Synonym ATRPA2, Sb04g026850, ATRPA32A, RPA2, RPA32A, ROR1
Functional annotation RPA2B - Putative single-stranded DNA binding complex subunit 2, expressed
UniProt A0A194YS81 , A0A194YR32
Pfam PF08784
Panther DB PTHR13989 PTHR13989:SF19
NCBI CDD KOG3108; Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit
KEGG Orthology K10739; RFA2, replication factor A2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G24490 : Replication protein A, subunit RPA32,replicon protein A2
RAP-DB (Rice) LOC_Os02g42230.1 : RPA2B - Putative single-stranded DNA binding complex subunit 2, expressed
MaizeGDB (Corn) Zm00025a021050
Brachypodium -
Barley -
Wheat TraesCS6A02G220800 , TraesCS6B02G262300 , TraesCS6D02G214400 , TraesCS6D02G214400 , TraesCS6D02G214400
Populus -


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cDNA sequences
Sobic.004G224100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G096201 - -
2 Sobic.002G013600 expressed protein -
3 Sobic.003G093500 protein binding protein, putative, expressed -
4 Sobic.003G139100 - -
5 Sobic.001G341900 domain of unknown function domain containing protein, expressed -
6 Sobic.001G060200 - -
7 Sobic.004G047001 - -
8 Sobic.008G192800 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
9 Sobic.007G061500 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
10 Sobic.009G004500 expressed protein -
11 Sobic.002G138200 domain of unknown function DUF966 domain containing protein, expressed -
12 Sobic.001G494400 DUF593 domain containing protein, expressed -
13 Sobic.001G028500 expressed protein -
14 Sobic.001G312801 - -
15 Sobic.004G288900 protein kinase, putative, expressed -
16 Sobic.004G337700 expressed protein -
17 Sobic.004G165600 glycosyl hydrolases family 17, putative, expressed -
18 Sobic.004G190800 galactosyltransferase family protein, putative, expressed K14413: beta-1,3-galactosyltransferase
19 Sobic.007G017300 endoglucanase, putative, expressed -
20 Sobic.002G282000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type, domain containing protein, expressed -


Gene co-expression network
sample Sobic004G224100 Sobic004G224100 Sobic005G096201 Sobic005G096201 Sobic004G224100--Sobic005G096201 Sobic002G013600 Sobic002G013600 Sobic004G224100--Sobic002G013600 Sobic003G093500 Sobic003G093500 Sobic004G224100--Sobic003G093500 Sobic003G139100 Sobic003G139100 Sobic004G224100--Sobic003G139100 Sobic001G341900 Sobic001G341900 Sobic004G224100--Sobic001G341900 Sobic001G060200 Sobic001G060200 Sobic004G224100--Sobic001G060200 Sobic004G047001 Sobic004G047001 Sobic004G224100--Sobic004G047001 Sobic008G192800 Sobic008G192800 Sobic004G224100--Sobic008G192800 Sobic007G061500 Sobic007G061500 Sobic004G224100--Sobic007G061500 Sobic002G209450 Sobic002G209450 Sobic005G096201--Sobic002G209450 Sobic005G096201--Sobic004G224100 Sobic005G096201--Sobic002G013600 Sobic005G096201--Sobic003G139100 Sobic010G150000 Sobic010G150000 Sobic005G096201--Sobic010G150000 Sobic002G231400 Sobic002G231400 Sobic005G096201--Sobic002G231400 Sobic004G165600 Sobic004G165600 Sobic005G096201--Sobic004G165600 Sobic001G494400 Sobic001G494400 Sobic005G096201--Sobic001G494400 Sobic003G429600 Sobic003G429600 Sobic005G096201--Sobic003G429600 Sobic004G190800 Sobic004G190800 Sobic002G013600--Sobic004G190800 Sobic002G013600--Sobic004G224100 Sobic002G013600--Sobic005G096201 Sobic002G013600--Sobic003G139100 Sobic002G013600--Sobic004G165600 Sobic002G013600--Sobic001G494400 Sobic002G013600--Sobic007G061500 Sobic002G346250 Sobic002G346250 Sobic002G013600--Sobic002G346250 Sobic003G241600 Sobic003G241600 Sobic002G013600--Sobic003G241600 Sobic009G004500 Sobic009G004500 Sobic003G093500--Sobic009G004500 Sobic003G093500--Sobic007G061500 Sobic007G017300 Sobic007G017300 Sobic003G093500--Sobic007G017300 Sobic003G093500--Sobic001G341900 Sobic003G093500--Sobic008G192800 Sobic009G045100 Sobic009G045100 Sobic003G093500--Sobic009G045100 Sobic005G155001 Sobic005G155001 Sobic003G093500--Sobic005G155001 Sobic003G093500--Sobic004G224100 Sobic003G093500--Sobic001G060200 Sobic003G139100--Sobic001G494400 Sobic003G139100--Sobic004G224100 Sobic003G139100--Sobic005G096201 Sobic003G139100--Sobic002G013600 Sobic003G139100--Sobic001G341900 Sobic003G139100--Sobic007G061500 Sobic003G139100--Sobic002G209450 Sobic004G314100 Sobic004G314100 Sobic003G139100--Sobic004G314100 Sobic003G139100--Sobic003G093500 Sobic001G341900--Sobic003G093500 Sobic001G341900--Sobic007G061500 Sobic001G341900--Sobic009G004500 Sobic001G341900--Sobic004G224100 Sobic004G337700 Sobic004G337700 Sobic001G341900--Sobic004G337700 Sobic001G341900--Sobic008G192800 Sobic001G341900--Sobic009G045100 Sobic001G368000 Sobic001G368000 Sobic001G341900--Sobic001G368000 Sobic009G114900 Sobic009G114900 Sobic001G341900--Sobic009G114900 Sobic001G060200--Sobic009G004500 Sobic001G028500 Sobic001G028500 Sobic001G060200--Sobic001G028500 Sobic001G060200--Sobic003G093500 Sobic001G060200--Sobic007G061500 Sobic001G060200--Sobic005G155001 Sobic003G106100 Sobic003G106100 Sobic001G060200--Sobic003G106100 Sobic001G527900 Sobic001G527900 Sobic001G060200--Sobic001G527900 Sobic001G060200--Sobic007G017300 Sobic001G060200--Sobic004G224100 Sobic003G043650 Sobic003G043650 Sobic004G047001--Sobic003G043650 Sobic004G047001--Sobic009G045100 Sobic002G138200 Sobic002G138200 Sobic004G047001--Sobic002G138200 Sobic004G047001--Sobic003G093500 Sobic004G047001--Sobic004G224100 Sobic004G200000 Sobic004G200000 Sobic004G047001--Sobic004G200000 Sobic004G047001--Sobic001G341900 Sobic010G009532 Sobic010G009532 Sobic004G047001--Sobic010G009532 Sobic004G047001--Sobic005G096201 Sobic007G090406 Sobic007G090406 Sobic008G192800--Sobic007G090406 Sobic008G192800--Sobic009G004500 Sobic008G192800--Sobic003G093500 Sobic001G176800 Sobic001G176800 Sobic008G192800--Sobic001G176800 Sobic008G192800--Sobic009G114900 Sobic008G192800--Sobic005G155001 Sobic008G192800--Sobic007G017300 Sobic008G192800--Sobic007G061500 Sobic008G192800--Sobic001G368000 Sobic004G231501 Sobic004G231501 Sobic007G061500--Sobic004G231501 Sobic007G061500--Sobic001G028500 Sobic007G061500--Sobic004G314100 Sobic007G061500--Sobic009G004500 Sobic007G061500--Sobic007G017300 Sobic007G061500--Sobic001G368000 Sobic007G061500--Sobic003G093500 Sobic007G061500--Sobic003G106100 Sobic001G483200 Sobic001G483200 Sobic007G061500--Sobic001G483200
Octagon: transcription factors


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