Gene annotation
Transcriptome id Sobic.001G520000.1,Sobic.001G520000.3,Sobic.001G520000.2
Synonym Sb01g048490
Functional annotation auxin efflux carrier component, putative, expressed
UniProt A0A1Z5SBR1 , A0A1Z5SBM2 , A0A1B6QQT4
Pfam PF03547
Panther DB PTHR31651 PTHR31651:SF7
NCBI CDD KOG2722; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G65980 : Auxin efflux carrier family protein
RAP-DB (Rice) LOC_Os09g38130.1 : auxin efflux carrier component, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK23844 , PNT78266 , PNT78267 , KQK23845
Barley HORVU4Hr1G082680.2 , HORVU4Hr1G082680.1
Wheat TraesCS4B02G322800 , TraesCS4D02G319200 , TraesCS5A02G494900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G520000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G253700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
2 Sobic.006G213350 - -
3 Sobic.001G483001 - -
4 Sobic.010G012200 - K00851: E2.7.1.12, gntK, gluconokinase
5 Sobic.003G155000 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
6 Sobic.008G160100 - -
7 Sobic.006G157450 - -
8 Sobic.001G096200 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
9 Sobic.008G170800 OsWAK126 - OsWAK receptor-like protein kinase, expressed -
10 Sobic.006G249600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
11 Sobic.003G362800 - -
12 Sobic.003G365200 expressed protein -
13 Sobic.003G155800 dnaJ homolog subfamily B member 11 precursor, putative, expressed K09517: DnaJ homolog subfamily B member 11
14 Sobic.002G209450 - -
15 Sobic.005G031400 embryogenesis transmembrane protein, putative, expressed -
16 Sobic.005G048800 expressed protein -
17 Sobic.002G206900 GEX2, putative, expressed -
18 Sobic.001G212900 FHA domain containing protein, putative, expressed K10867: NBN, nibrin
19 Sobic.010G000200 expressed protein -
20 Sobic.004G144300 - -


Gene co-expression network
sample Sobic001G520000 Sobic001G520000 Sobic003G253700 Sobic003G253700 Sobic001G520000--Sobic003G253700 Sobic006G213350 Sobic006G213350 Sobic001G520000--Sobic006G213350 Sobic001G483001 Sobic001G483001 Sobic001G520000--Sobic001G483001 Sobic010G012200 Sobic010G012200 Sobic001G520000--Sobic010G012200 Sobic003G155000 Sobic003G155000 Sobic001G520000--Sobic003G155000 Sobic008G160100 Sobic008G160100 Sobic001G520000--Sobic008G160100 Sobic006G157450 Sobic006G157450 Sobic001G520000--Sobic006G157450 Sobic001G096200 Sobic001G096200 Sobic001G520000--Sobic001G096200 Sobic008G170800 Sobic008G170800 Sobic001G520000--Sobic008G170800 Sobic003G253700--Sobic003G155000 Sobic003G253700--Sobic001G520000 Sobic003G365200 Sobic003G365200 Sobic003G253700--Sobic003G365200 Sobic003G253700--Sobic010G012200 Sobic006G249600 Sobic006G249600 Sobic003G253700--Sobic006G249600 Sobic003G253700--Sobic006G157450 Sobic003G155800 Sobic003G155800 Sobic003G253700--Sobic003G155800 Sobic003G253700--Sobic008G170800 Sobic003G262600 Sobic003G262600 Sobic003G253700--Sobic003G262600 Sobic006G213350--Sobic001G520000 Sobic005G031400 Sobic005G031400 Sobic006G213350--Sobic005G031400 Sobic006G213350--Sobic001G483001 Sobic006G213350--Sobic008G160100 Sobic006G213350--Sobic010G012200 Sobic008G143901 Sobic008G143901 Sobic006G213350--Sobic008G143901 Sobic006G213350--Sobic003G253700 Sobic006G243000 Sobic006G243000 Sobic006G213350--Sobic006G243000 Sobic006G213350--Sobic006G157450 Sobic001G483001--Sobic001G520000 Sobic001G483001--Sobic006G213350 Sobic001G483001--Sobic008G143901 Sobic001G483001--Sobic008G160100 Sobic001G483001--Sobic006G157450 Sobic001G483001--Sobic005G031400 Sobic001G483001--Sobic008G170800 Sobic001G483001--Sobic010G012200 Sobic001G483001--Sobic003G253700 Sobic010G012200--Sobic001G520000 Sobic010G012200--Sobic003G155000 Sobic010G012200--Sobic003G253700 Sobic001G038700 Sobic001G038700 Sobic010G012200--Sobic001G038700 Sobic010G012200--Sobic008G170800 Sobic010G012200--Sobic006G157450 Sobic010G000200 Sobic010G000200 Sobic010G012200--Sobic010G000200 Sobic004G315400 Sobic004G315400 Sobic010G012200--Sobic004G315400 Sobic008G103400 Sobic008G103400 Sobic010G012200--Sobic008G103400 Sobic003G155000--Sobic003G253700 Sobic003G155000--Sobic001G520000 Sobic003G155000--Sobic010G012200 Sobic003G155000--Sobic003G365200 Sobic003G155000--Sobic003G262600 Sobic005G048800 Sobic005G048800 Sobic003G155000--Sobic005G048800 Sobic003G155000--Sobic006G249600 Sobic003G155000--Sobic008G170800 Sobic003G155000--Sobic006G157450 Sobic008G160100--Sobic001G520000 Sobic008G160100--Sobic001G483001 Sobic008G160100--Sobic006G213350 Sobic005G228650 Sobic005G228650 Sobic008G160100--Sobic005G228650 Sobic004G026000 Sobic004G026000 Sobic008G160100--Sobic004G026000 Sobic004G310400 Sobic004G310400 Sobic008G160100--Sobic004G310400 Sobic008G160100--Sobic004G315400 Sobic008G160100--Sobic008G143901 Sobic008G160100--Sobic010G012200 Sobic006G157450--Sobic001G038700 Sobic006G157450--Sobic008G170800 Sobic001G191500 Sobic001G191500 Sobic006G157450--Sobic001G191500 Sobic006G157450--Sobic001G520000 Sobic006G157450--Sobic010G012200 Sobic006G157450--Sobic003G253700 Sobic006G157450--Sobic003G155000 Sobic006G157450--Sobic001G483001 Sobic008G190600 Sobic008G190600 Sobic006G157450--Sobic008G190600 Sobic001G096200--Sobic004G310400 Sobic001G096200--Sobic004G026000 Sobic001G096200--Sobic001G520000 Sobic004G314100 Sobic004G314100 Sobic001G096200--Sobic004G314100 Sobic001G096200--Sobic003G155800 Sobic001G096200--Sobic006G243000 Sobic003G118500 Sobic003G118500 Sobic001G096200--Sobic003G118500 Sobic001G096200--Sobic003G253700 Sobic004G231501 Sobic004G231501 Sobic001G096200--Sobic004G231501 Sobic001G090700 Sobic001G090700 Sobic008G170800--Sobic001G090700 Sobic008G170800--Sobic006G157450 Sobic008G170800--Sobic001G038700 Sobic008G170800--Sobic010G012200 Sobic008G170800--Sobic008G190600 Sobic008G170800--Sobic003G155000 Sobic001G454600 Sobic001G454600 Sobic008G170800--Sobic001G454600 Sobic008G142200 Sobic008G142200 Sobic008G170800--Sobic008G142200 Sobic008G170800--Sobic003G253700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.