Gene annotation
| Transcriptome id | Sobic.001G212900.1 |
|---|---|
| Synonym | NBS1, ATNBS1, Sb01g018820 |
| Functional annotation | FHA domain containing protein, putative, expressed |
| UniProt | C5WXH8 |
| Pfam | PF00498 |
| Panther DB | PTHR12162 |
| NCBI CDD | - |
| KEGG Orthology | K10867; NBN, nibrin |
| Gene Ontology | GO:0005515; protein binding |
Orthologs (automatic annotation)
| TAIR | AT3G02680 : nijmegen breakage syndrome 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os10g34580.2 : FHA domain containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a017551 |
| Brachypodium | KQJ97202 |
| Barley | HORVU1Hr1G043110.12 , HORVU1Hr1G043110.13 , HORVU1Hr1G043110.10 , HORVU1Hr1G043110.15 , HORVU1Hr1G043110.3 , HORVU1Hr1G043110.4 , HORVU1Hr1G043110.5 , HORVU1Hr1G043110.6 , HORVU1Hr1G043110.7 , HORVU1Hr1G043110.8 , HORVU1Hr1G043110.11 , HORVU1Hr1G043110.14 , HORVU1Hr1G043110.9 |
| Wheat | TraesCS1A02G162200 , TraesCS1A02G162200 , TraesCS1B02G178800 , TraesCS1D02G159000 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G109400 | glycosyl hydrolases family 17, putative, expressed | - |
| 2 | Sobic.006G249600 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed | - |
| 3 | Sobic.002G187900 | expressed protein | - |
| 4 | Sobic.002G374000 | - | - |
| 5 | Sobic.010G000200 | expressed protein | - |
| 6 | Sobic.002G110600 | regulatory protein, putative, expressed | - |
| 7 | Sobic.004G127600 | glyoxalase family protein, putative, expressed | K01759: GLO1, lactoylglutathione lyase |
| 8 | Sobic.004G173200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ammonium transporter protein, putative, expressed | K03320: amt, AMT, ammonium transporter, Amt family |
| 9 | Sobic.010G012200 | - | K00851: E2.7.1.12, gntK, gluconokinase |
| 10 | Sobic.004G315400 | cation efflux family protein, putative, expressed | - |
| 11 | Sobic.003G225200 | CAMK_CAMK_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K13412: calcium-dependent protein kinase |
| 12 | Sobic.002G398600 | cytochrome P450 72A1, putative, expressed | K15639: CYP734A1, PHYB activation tagged suppressor 1 |
| 13 | Sobic.004G072201 | - | - |
| 14 | Sobic.003G263900 | reticulon domain containing protein, putative, expressed | - |
| 15 | Sobic.001G520000 | auxin efflux carrier component, putative, expressed | - |
| 16 | Sobic.003G253700 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein | - |
| 17 | Sobic.006G255200 | - | - |
| 18 | Sobic.005G048700 | NAD dependent epimerase/dehydratase family protein, putative, expressed | - |
| 19 | Sobic.008G016800 | zinc finger DHHC domain-containing protein, putative, expressed | - |
| 20 | Sobic.001G383200 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@bromodomain domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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