Gene annotation
Transcriptome id Sobic.004G315400.1,Sobic.004G315400.2
Synonym Sb04g034705
Functional annotation cation efflux family protein, putative, expressed
UniProt A0A1Z5RPW9 , A0A194YSI1
Pfam PF16916 PF01545
Panther DB PTHR11562 PTHR11562:SF59
NCBI CDD KOG1485; Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0008324cation transmembrane transporter activity GO:0006812cation transport


Orthologs (automatic annotation)
TAIR AT3G58060 : Cation efflux family protein
RAP-DB (Rice) LOC_Os02g53490.1 : cation efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a022294
Brachypodium KQK01662
Barley HORVU6Hr1G078910.1 , HORVU6Hr1G078910.2 , HORVU6Hr1G078910.5 , HORVU6Hr1G078910.4 , HORVU6Hr1G078910.9 , HORVU6Hr1G078910.8 , HORVU6Hr1G078910.15 , HORVU6Hr1G078910.14 , HORVU6Hr1G078910.16 , HORVU6Hr1G078910.11 , HORVU6Hr1G078910.10 , HORVU6Hr1G078910.13 , HORVU6Hr1G078910.12 , HORVU6Hr1G078910.3 , HORVU6Hr1G078910.7 , HORVU6Hr1G078910.6
Wheat TraesCS6D02G302400 , TraesCS6D02G302400 , TraesCS6D02G302400 , TraesCS6A02G322500 , TraesCS6B02G353300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G374000 - -
2 Sobic.010G012200 - K00851: E2.7.1.12, gntK, gluconokinase
3 Sobic.001G109400 glycosyl hydrolases family 17, putative, expressed -
4 Sobic.001G212900 FHA domain containing protein, putative, expressed K10867: NBN, nibrin
5 Sobic.008G103400 universal stress protein domain containing protein, putative, expressed -
6 Sobic.001G483001 - -
7 Sobic.004G072201 - -
8 Sobic.005G031400 embryogenesis transmembrane protein, putative, expressed -
9 Sobic.002G110600 regulatory protein, putative, expressed -
10 Sobic.001G520000 auxin efflux carrier component, putative, expressed -
11 Sobic.001G383200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@bromodomain domain containing protein, expressed -
12 Sobic.006G213350 - -
13 Sobic.008G160100 - -
14 Sobic.006G136300 - -
15 Sobic.001G052700 vacuolar protein sorting-associated protein 35, putative, expressed K18468: vacuolar protein sorting-associated protein 35
16 Sobic.004G068600 cytochrome P450 71D10, putative, expressed -
17 Sobic.003G063400 glycosyltransferase family 43 protein, putative, expressed -
18 Sobic.003G253700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
19 Sobic.008G192900 -(PubMedID : 29751546)@sodium/hydrogen exchanger 7, putative, expressed -
20 Sobic.006G157450 - -


Gene co-expression network
sample Sobic004G315400 Sobic004G315400 Sobic002G374000 Sobic002G374000 Sobic004G315400--Sobic002G374000 Sobic010G012200 Sobic010G012200 Sobic004G315400--Sobic010G012200 Sobic001G109400 Sobic001G109400 Sobic004G315400--Sobic001G109400 Sobic001G212900 Sobic001G212900 Sobic004G315400--Sobic001G212900 Sobic008G103400 Sobic008G103400 Sobic004G315400--Sobic008G103400 Sobic001G483001 Sobic001G483001 Sobic004G315400--Sobic001G483001 Sobic004G072201 Sobic004G072201 Sobic004G315400--Sobic004G072201 Sobic005G031400 Sobic005G031400 Sobic004G315400--Sobic005G031400 Sobic002G110600 Sobic002G110600 Sobic004G315400--Sobic002G110600 Sobic002G374000--Sobic004G072201 Sobic002G374000--Sobic001G109400 Sobic002G374000--Sobic004G315400 Sobic002G374000--Sobic001G212900 Sobic001G383200 Sobic001G383200 Sobic002G374000--Sobic001G383200 Sobic004G127600 Sobic004G127600 Sobic002G374000--Sobic004G127600 Sobic007G183600 Sobic007G183600 Sobic002G374000--Sobic007G183600 Sobic003G069601 Sobic003G069601 Sobic002G374000--Sobic003G069601 Sobic002G374000--Sobic010G012200 Sobic001G520000 Sobic001G520000 Sobic010G012200--Sobic001G520000 Sobic003G155000 Sobic003G155000 Sobic010G012200--Sobic003G155000 Sobic003G253700 Sobic003G253700 Sobic010G012200--Sobic003G253700 Sobic001G038700 Sobic001G038700 Sobic010G012200--Sobic001G038700 Sobic008G170800 Sobic008G170800 Sobic010G012200--Sobic008G170800 Sobic006G157450 Sobic006G157450 Sobic010G012200--Sobic006G157450 Sobic010G000200 Sobic010G000200 Sobic010G012200--Sobic010G000200 Sobic010G012200--Sobic004G315400 Sobic010G012200--Sobic008G103400 Sobic001G109400--Sobic001G212900 Sobic001G109400--Sobic004G072201 Sobic001G109400--Sobic002G374000 Sobic002G187900 Sobic002G187900 Sobic001G109400--Sobic002G187900 Sobic001G109400--Sobic001G383200 Sobic006G249600 Sobic006G249600 Sobic001G109400--Sobic006G249600 Sobic006G255200 Sobic006G255200 Sobic001G109400--Sobic006G255200 Sobic001G109400--Sobic004G315400 Sobic008G016800 Sobic008G016800 Sobic001G109400--Sobic008G016800 Sobic001G212900--Sobic001G109400 Sobic001G212900--Sobic006G249600 Sobic001G212900--Sobic002G187900 Sobic001G212900--Sobic002G374000 Sobic001G212900--Sobic010G000200 Sobic001G212900--Sobic002G110600 Sobic001G212900--Sobic004G127600 Sobic004G173200 Sobic004G173200 Sobic001G212900--Sobic004G173200 Sobic001G212900--Sobic010G012200 Sobic008G103400--Sobic002G110600 Sobic004G181000 Sobic004G181000 Sobic008G103400--Sobic004G181000 Sobic008G192900 Sobic008G192900 Sobic008G103400--Sobic008G192900 Sobic003G362800 Sobic003G362800 Sobic008G103400--Sobic003G362800 Sobic008G103400--Sobic010G012200 Sobic002G001500 Sobic002G001500 Sobic008G103400--Sobic002G001500 Sobic009G223900 Sobic009G223900 Sobic008G103400--Sobic009G223900 Sobic008G103400--Sobic008G016800 Sobic008G103400--Sobic004G315400 Sobic001G483001--Sobic001G520000 Sobic006G213350 Sobic006G213350 Sobic001G483001--Sobic006G213350 Sobic008G143901 Sobic008G143901 Sobic001G483001--Sobic008G143901 Sobic008G160100 Sobic008G160100 Sobic001G483001--Sobic008G160100 Sobic001G483001--Sobic006G157450 Sobic001G483001--Sobic005G031400 Sobic001G483001--Sobic008G170800 Sobic001G483001--Sobic010G012200 Sobic001G483001--Sobic003G253700 Sobic004G072201--Sobic001G383200 Sobic004G072201--Sobic002G374000 Sobic004G072201--Sobic001G109400 Sobic002G309300 Sobic002G309300 Sobic004G072201--Sobic002G309300 Sobic004G072201--Sobic001G038700 Sobic001G442000 Sobic001G442000 Sobic004G072201--Sobic001G442000 Sobic004G072201--Sobic006G255200 Sobic003G263900 Sobic003G263900 Sobic004G072201--Sobic003G263900 Sobic004G072201--Sobic007G183600 Sobic008G190600 Sobic008G190600 Sobic005G031400--Sobic008G190600 Sobic005G031400--Sobic006G213350 Sobic005G031400--Sobic001G483001 Sobic005G031400--Sobic010G012200 Sobic008G142200 Sobic008G142200 Sobic005G031400--Sobic008G142200 Sobic005G031400--Sobic006G157450 Sobic005G031400--Sobic001G520000 Sobic005G031400--Sobic004G315400 Sobic005G031400--Sobic008G170800 Sobic002G110600--Sobic008G103400 Sobic002G110600--Sobic008G016800 Sobic002G110600--Sobic001G212900 Sobic002G110600--Sobic003G362800 Sobic002G110600--Sobic004G173200 Sobic002G110600--Sobic010G012200 Sobic002G110600--Sobic001G109400 Sobic002G110600--Sobic004G315400 Sobic002G398600 Sobic002G398600 Sobic002G110600--Sobic002G398600
Octagon: transcription factors


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