Gene annotation
Transcriptome id Sobic.001G052700.1
Synonym VPS35B, Sb01g004840
Functional annotation vacuolar protein sorting-associated protein 35, putative, expressed
UniProt C5WX27
Pfam PF03635
Panther DB PTHR11099 PTHR11099:SF1
NCBI CDD -
KEGG Orthology K18468; vacuolar protein sorting-associated protein 35
Gene Ontology GO:0015031; protein transport GO:0008565obsolete protein transporter activity


Orthologs (automatic annotation)
TAIR AT1G75850 : VPS35 homolog B
RAP-DB (Rice) LOC_Os03g58700.1 : vacuolar protein sorting-associated protein 35, putative, expressed
MaizeGDB (Corn) Zm00025a016546 , Zm00025a008600
Brachypodium KQK12650
Barley HORVU5Hr1G107250.4 , HORVU5Hr1G107250.5 , HORVU5Hr1G107250.6 , HORVU5Hr1G107250.1 , HORVU5Hr1G107250.2 , HORVU5Hr1G107250.3
Wheat TraesCS5A02G448400 , TraesCS5B02G453000 , TraesCS5D02G455000 , TraesCS5A02G448400
Populus PNT36146 , PNT36145


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G136300 - -
2 Sobic.004G267400 basic helix-loop-helix, putative, expressed -
3 Sobic.004G315400 cation efflux family protein, putative, expressed -
4 Sobic.006G221500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed -
5 Sobic.002G374000 - -
6 Sobic.004G072201 - -
7 Sobic.001G383200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@bromodomain domain containing protein, expressed -
8 Sobic.004G068600 cytochrome P450 71D10, putative, expressed -
9 Sobic.005G228650 - -
10 Sobic.001G109400 glycosyl hydrolases family 17, putative, expressed -
11 Sobic.001G483001 - -
12 Sobic.001G460900 expressed protein -
13 Sobic.007G183600 expressed protein -
14 Sobic.008G160100 - -
15 Sobic.005G031400 embryogenesis transmembrane protein, putative, expressed -
16 Sobic.006G279100 Positive regulator of ABA(PubMedID : 30367619)@CAMK_CAMK_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
17 Sobic.001G212900 FHA domain containing protein, putative, expressed K10867: NBN, nibrin
18 Sobic.010G012200 - K00851: E2.7.1.12, gntK, gluconokinase
19 Sobic.006G213350 - -
20 Sobic.010G042300 DTA2, putative, expressed -


Gene co-expression network
sample Sobic001G052700 Sobic001G052700 Sobic006G136300 Sobic006G136300 Sobic001G052700--Sobic006G136300 Sobic004G267400 Sobic004G267400 Sobic001G052700--Sobic004G267400 Sobic004G315400 Sobic004G315400 Sobic001G052700--Sobic004G315400 Sobic006G221500 Sobic006G221500 Sobic001G052700--Sobic006G221500 Sobic002G374000 Sobic002G374000 Sobic001G052700--Sobic002G374000 Sobic004G072201 Sobic004G072201 Sobic001G052700--Sobic004G072201 Sobic001G383200 Sobic001G383200 Sobic001G052700--Sobic001G383200 Sobic004G068600 Sobic004G068600 Sobic001G052700--Sobic004G068600 Sobic005G228650 Sobic005G228650 Sobic001G052700--Sobic005G228650 Sobic006G136300--Sobic006G221500 Sobic006G136300--Sobic001G052700 Sobic006G136300--Sobic004G315400 Sobic006G136300--Sobic004G267400 Sobic005G031400 Sobic005G031400 Sobic006G136300--Sobic005G031400 Sobic006G136300--Sobic002G374000 Sobic006G235801 Sobic006G235801 Sobic006G136300--Sobic006G235801 Sobic006G213350 Sobic006G213350 Sobic006G136300--Sobic006G213350 Sobic009G173700 Sobic009G173700 Sobic006G136300--Sobic009G173700 Sobic004G267400--Sobic004G068600 Sobic004G267400--Sobic001G052700 Sobic004G267400--Sobic006G136300 Sobic004G267400--Sobic002G374000 Sobic004G267400--Sobic006G221500 Sobic007G183600 Sobic007G183600 Sobic004G267400--Sobic007G183600 Sobic004G267400--Sobic004G315400 Sobic003G069601 Sobic003G069601 Sobic004G267400--Sobic003G069601 Sobic004G267400--Sobic005G228650 Sobic004G315400--Sobic002G374000 Sobic010G012200 Sobic010G012200 Sobic004G315400--Sobic010G012200 Sobic001G109400 Sobic001G109400 Sobic004G315400--Sobic001G109400 Sobic001G212900 Sobic001G212900 Sobic004G315400--Sobic001G212900 Sobic008G103400 Sobic008G103400 Sobic004G315400--Sobic008G103400 Sobic001G483001 Sobic001G483001 Sobic004G315400--Sobic001G483001 Sobic004G315400--Sobic004G072201 Sobic004G315400--Sobic005G031400 Sobic002G110600 Sobic002G110600 Sobic004G315400--Sobic002G110600 Sobic006G221500--Sobic006G136300 Sobic006G221500--Sobic009G173700 Sobic006G221500--Sobic006G235801 Sobic002G046150 Sobic002G046150 Sobic006G221500--Sobic002G046150 Sobic006G221500--Sobic001G052700 Sobic006G221500--Sobic004G267400 Sobic010G089350 Sobic010G089350 Sobic006G221500--Sobic010G089350 Sobic003G162600 Sobic003G162600 Sobic006G221500--Sobic003G162600 Sobic008G142500 Sobic008G142500 Sobic006G221500--Sobic008G142500 Sobic002G374000--Sobic004G072201 Sobic002G374000--Sobic001G109400 Sobic002G374000--Sobic004G315400 Sobic002G374000--Sobic001G212900 Sobic002G374000--Sobic001G383200 Sobic004G127600 Sobic004G127600 Sobic002G374000--Sobic004G127600 Sobic002G374000--Sobic007G183600 Sobic002G374000--Sobic003G069601 Sobic002G374000--Sobic010G012200 Sobic004G072201--Sobic001G383200 Sobic004G072201--Sobic002G374000 Sobic004G072201--Sobic001G109400 Sobic002G309300 Sobic002G309300 Sobic004G072201--Sobic002G309300 Sobic001G038700 Sobic001G038700 Sobic004G072201--Sobic001G038700 Sobic001G442000 Sobic001G442000 Sobic004G072201--Sobic001G442000 Sobic006G255200 Sobic006G255200 Sobic004G072201--Sobic006G255200 Sobic003G263900 Sobic003G263900 Sobic004G072201--Sobic003G263900 Sobic004G072201--Sobic007G183600 Sobic001G383200--Sobic004G072201 Sobic001G383200--Sobic001G109400 Sobic001G383200--Sobic002G374000 Sobic001G383200--Sobic002G309300 Sobic001G383200--Sobic003G263900 Sobic006G157450 Sobic006G157450 Sobic001G383200--Sobic006G157450 Sobic001G383200--Sobic001G038700 Sobic001G383200--Sobic008G103400 Sobic001G383200--Sobic006G255200 Sobic010G019500 Sobic010G019500 Sobic004G068600--Sobic010G019500 Sobic004G068600--Sobic004G267400 Sobic004G068600--Sobic007G183600 Sobic004G068600--Sobic004G315400 Sobic004G068600--Sobic004G072201 Sobic004G068600--Sobic002G374000 Sobic004G068600--Sobic008G103400 Sobic004G068600--Sobic001G383200 Sobic001G424650 Sobic001G424650 Sobic004G068600--Sobic001G424650 Sobic008G160100 Sobic008G160100 Sobic005G228650--Sobic008G160100 Sobic005G228650--Sobic006G157450 Sobic001G245100 Sobic001G245100 Sobic005G228650--Sobic001G245100 Sobic006G279100 Sobic006G279100 Sobic005G228650--Sobic006G279100 Sobic005G228650--Sobic001G483001 Sobic005G228650--Sobic001G038700 Sobic010G042300 Sobic010G042300 Sobic005G228650--Sobic010G042300 Sobic005G228650--Sobic004G072201 Sobic005G228650--Sobic001G109400
Octagon: transcription factors


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