Gene annotation
Transcriptome id Sobic.004G267400.1,Sobic.004G267400.2
Synonym CIB1, Sb04g030530
Functional annotation basic helix-loop-helix, putative, expressed
UniProt A0A1Z5RPB9 , C5Y0B6
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF149
NCBI CDD KOG4304; Transcriptional repressors of the hairy/E(spl) family (contains HLH)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G34530 : cryptochrome-interacting basic-helix-loop-helix 1
RAP-DB (Rice) LOC_Os02g47660.1 : basic helix-loop-helix, putative, expressed
MaizeGDB (Corn) Zm00025a032463 , Zm00025a021724 , Zm00025a029703 , Zm00025a015624
Brachypodium KQJ82138 , KQK00940 , KQK00941 , KQJ98754
Barley HORVU6Hr1G068980.12 , HORVU6Hr1G068980.11 , HORVU6Hr1G068980.10 , HORVU6Hr1G068980.9 , HORVU6Hr1G068980.8 , HORVU6Hr1G068980.7 , HORVU6Hr1G068980.6 , HORVU6Hr1G068980.5 , HORVU6Hr1G068980.4 , HORVU6Hr1G068980.3 , HORVU6Hr1G068980.2 , HORVU6Hr1G068980.1
Wheat TraesCS2A02G275600 , TraesCS6D02G253000 , TraesCS2D02G274600 , TraesCS6A02G273000 , TraesCS6A02G273000 , TraesCS6A02G273000 , TraesCS2B02G293300 , TraesCS2B02G293300 , TraesCS6B02G300400
Populus -


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cDNA sequences
Sobic.004G267400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G068600 cytochrome P450 71D10, putative, expressed -
2 Sobic.001G052700 vacuolar protein sorting-associated protein 35, putative, expressed K18468: vacuolar protein sorting-associated protein 35
3 Sobic.006G136300 - -
4 Sobic.002G374000 - -
5 Sobic.006G221500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed -
6 Sobic.007G183600 expressed protein -
7 Sobic.004G315400 cation efflux family protein, putative, expressed -
8 Sobic.003G069601 - -
9 Sobic.005G228650 - -
10 Sobic.004G072201 - -
11 Sobic.010G019500 cytochrome P450 86A1, putative, expressed -
12 Sobic.001G383200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@bromodomain domain containing protein, expressed -
13 Sobic.001G109400 glycosyl hydrolases family 17, putative, expressed -
14 Sobic.009G204700 light repressible receptor protein kinase, putative, expressed -
15 Sobic.010G089350 - -
16 Sobic.006G045601 - -
17 Sobic.001G212900 FHA domain containing protein, putative, expressed K10867: NBN, nibrin
18 Sobic.009G173700 expansin precursor, putative, expressed -
19 Sobic.008G160100 - -
20 Sobic.004G267650 - -


Gene co-expression network
sample Sobic004G267400 Sobic004G267400 Sobic004G068600 Sobic004G068600 Sobic004G267400--Sobic004G068600 Sobic001G052700 Sobic001G052700 Sobic004G267400--Sobic001G052700 Sobic006G136300 Sobic006G136300 Sobic004G267400--Sobic006G136300 Sobic002G374000 Sobic002G374000 Sobic004G267400--Sobic002G374000 Sobic006G221500 Sobic006G221500 Sobic004G267400--Sobic006G221500 Sobic007G183600 Sobic007G183600 Sobic004G267400--Sobic007G183600 Sobic004G315400 Sobic004G315400 Sobic004G267400--Sobic004G315400 Sobic003G069601 Sobic003G069601 Sobic004G267400--Sobic003G069601 Sobic005G228650 Sobic005G228650 Sobic004G267400--Sobic005G228650 Sobic010G019500 Sobic010G019500 Sobic004G068600--Sobic010G019500 Sobic004G068600--Sobic004G267400 Sobic004G068600--Sobic007G183600 Sobic004G068600--Sobic004G315400 Sobic004G072201 Sobic004G072201 Sobic004G068600--Sobic004G072201 Sobic004G068600--Sobic002G374000 Sobic008G103400 Sobic008G103400 Sobic004G068600--Sobic008G103400 Sobic001G383200 Sobic001G383200 Sobic004G068600--Sobic001G383200 Sobic001G424650 Sobic001G424650 Sobic004G068600--Sobic001G424650 Sobic001G052700--Sobic006G136300 Sobic001G052700--Sobic004G267400 Sobic001G052700--Sobic004G315400 Sobic001G052700--Sobic006G221500 Sobic001G052700--Sobic002G374000 Sobic001G052700--Sobic004G072201 Sobic001G052700--Sobic001G383200 Sobic001G052700--Sobic004G068600 Sobic001G052700--Sobic005G228650 Sobic006G136300--Sobic006G221500 Sobic006G136300--Sobic001G052700 Sobic006G136300--Sobic004G315400 Sobic006G136300--Sobic004G267400 Sobic005G031400 Sobic005G031400 Sobic006G136300--Sobic005G031400 Sobic006G136300--Sobic002G374000 Sobic006G235801 Sobic006G235801 Sobic006G136300--Sobic006G235801 Sobic006G213350 Sobic006G213350 Sobic006G136300--Sobic006G213350 Sobic009G173700 Sobic009G173700 Sobic006G136300--Sobic009G173700 Sobic002G374000--Sobic004G072201 Sobic001G109400 Sobic001G109400 Sobic002G374000--Sobic001G109400 Sobic002G374000--Sobic004G315400 Sobic001G212900 Sobic001G212900 Sobic002G374000--Sobic001G212900 Sobic002G374000--Sobic001G383200 Sobic004G127600 Sobic004G127600 Sobic002G374000--Sobic004G127600 Sobic002G374000--Sobic007G183600 Sobic002G374000--Sobic003G069601 Sobic010G012200 Sobic010G012200 Sobic002G374000--Sobic010G012200 Sobic006G221500--Sobic006G136300 Sobic006G221500--Sobic009G173700 Sobic006G221500--Sobic006G235801 Sobic002G046150 Sobic002G046150 Sobic006G221500--Sobic002G046150 Sobic006G221500--Sobic001G052700 Sobic006G221500--Sobic004G267400 Sobic010G089350 Sobic010G089350 Sobic006G221500--Sobic010G089350 Sobic003G162600 Sobic003G162600 Sobic006G221500--Sobic003G162600 Sobic008G142500 Sobic008G142500 Sobic006G221500--Sobic008G142500 Sobic007G183600--Sobic003G069601 Sobic007G183600--Sobic004G072201 Sobic007G183600--Sobic002G374000 Sobic004G093700 Sobic004G093700 Sobic007G183600--Sobic004G093700 Sobic007G183600--Sobic004G068600 Sobic007G183600--Sobic001G383200 Sobic003G063400 Sobic003G063400 Sobic007G183600--Sobic003G063400 Sobic001G442000 Sobic001G442000 Sobic007G183600--Sobic001G442000 Sobic009G026600 Sobic009G026600 Sobic007G183600--Sobic009G026600 Sobic004G315400--Sobic002G374000 Sobic004G315400--Sobic010G012200 Sobic004G315400--Sobic001G109400 Sobic004G315400--Sobic001G212900 Sobic004G315400--Sobic008G103400 Sobic001G483001 Sobic001G483001 Sobic004G315400--Sobic001G483001 Sobic004G315400--Sobic004G072201 Sobic004G315400--Sobic005G031400 Sobic002G110600 Sobic002G110600 Sobic004G315400--Sobic002G110600 Sobic003G069601--Sobic007G183600 Sobic001G261452 Sobic001G261452 Sobic003G069601--Sobic001G261452 Sobic003G069601--Sobic002G374000 Sobic003G069601--Sobic004G072201 Sobic008G046700 Sobic008G046700 Sobic003G069601--Sobic008G046700 Sobic006G045601 Sobic006G045601 Sobic003G069601--Sobic006G045601 Sobic006G255200 Sobic006G255200 Sobic003G069601--Sobic006G255200 Sobic003G069601--Sobic001G442000 Sobic002G127300 Sobic002G127300 Sobic003G069601--Sobic002G127300 Sobic008G160100 Sobic008G160100 Sobic005G228650--Sobic008G160100 Sobic006G157450 Sobic006G157450 Sobic005G228650--Sobic006G157450 Sobic001G245100 Sobic001G245100 Sobic005G228650--Sobic001G245100 Sobic006G279100 Sobic006G279100 Sobic005G228650--Sobic006G279100 Sobic005G228650--Sobic001G483001 Sobic001G038700 Sobic001G038700 Sobic005G228650--Sobic001G038700 Sobic010G042300 Sobic010G042300 Sobic005G228650--Sobic010G042300 Sobic005G228650--Sobic004G072201 Sobic005G228650--Sobic001G109400
Octagon: transcription factors


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